Analysis of interatomic Contacts of Structural Units in PDB entry:
7WVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WVD entry

There are 5 chains in PDB entry 7WVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8PRO 325
B
 GLY 1LYS 172
C
 GLY 8PRO 325
D
 GLY 1LYS 172
E
 GLY 8GLN 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7WVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 71Right-handed alpha
Helix 2
AA2
A
72 79Right-handed 310
Helix 3
AA3
A
103 115Right-handed alpha
Helix 4
AA4
A
187 195Right-handed alpha
Helix 5
AA5
B
37 55Right-handed alpha
Helix 6
AA6
B
75 127Right-handed alpha
Helix 7
AA7
B
145 154Right-handed alpha
Helix 8
AA8
B
158 172Right-handed alpha
Helix 9
AA9
C
64 71Right-handed alpha
Helix 10
AB1
C
72 79Right-handed 310
Helix 11
AB2
C
103 115Right-handed alpha
Helix 12
AB3
C
187 196Right-handed alpha
Helix 13
AB4
D
37 55Right-handed alpha
Helix 14
AB5
D
75 127Right-handed alpha
Helix 15
AB6
D
145 154Right-handed alpha
Helix 16
AB7
D
158 172Right-handed alpha
Helix 17
AB8
E
64 71Right-handed alpha
Helix 18
AB9
E
72 79Right-handed 310
Helix 19
AC1
E
103 115Right-handed alpha
Helix 20
AC2
E
187 195Right-handed alpha
Helix 21
AC3
F
37 55Right-handed alpha
Helix 22
AC4
F
75 127Right-handed alpha
Helix 23
AC5
F
145 154Right-handed alpha
Helix 24
AC6
F
158 172Right-handed alpha
Helix 25
AC7
G
58 62Right-handed 310
Helix 26
AC8
G
117 121Right-handed 310
Helix 27
AC9
H
121 125Right-handed 310
Helix 28
AD1
I
58 62Right-handed 310
Helix 29
AD2
I
117 121Right-handed 310
Helix 30
AD3
J
121 125Right-handed 310
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There are 43 sheets in PDB entry 7WVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 36first strand
Strand 2
B
22 27anti-parallel
Strand 3
A
11 16anti-parallel
Strand 4
B
137 140anti-parallel
Strand 5
B
130 132anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
33 35anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
316 318anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
295 296parallel
Strand 3
A
308 309parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
85 88parallel
Strand 3
A
267 270parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
229 237parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
256 259anti-parallel
Strand 5
A
119 121anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
229 237parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
251 254anti-parallel
Strand 5
A
150 152anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
154 155anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
144 145anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 169first strand
Strand 2
A
242 249anti-parallel
Strand 3
A
201 205anti-parallel
Strand 4
A
210 213anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 288first strand
Strand 2
A
282 284anti-parallel
Strand 3
A
302 305anti-parallel
Strand 4
B
61 62anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 36first strand
Strand 2
D
22 27anti-parallel
Strand 3
C
11 16anti-parallel
Strand 4
D
137 140anti-parallel
Strand 5
D
130 132anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 25first strand
Strand 2
C
33 35anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 40first strand
Strand 2
C
316 318anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 43first strand
Strand 2
C
295 296parallel
Strand 3
C
308 309parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
85 88parallel
Strand 3
C
267 270parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 100first strand
Strand 2
C
229 237parallel
Strand 3
C
176 184anti-parallel
Strand 4
C
256 259anti-parallel
Strand 5
C
119 121anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 100first strand
Strand 2
C
229 237parallel
Strand 3
C
176 184anti-parallel
Strand 4
C
251 254anti-parallel
Strand 5
C
150 152anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 139first strand
Strand 2
C
144 145anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 169first strand
Strand 2
C
242 249anti-parallel
Strand 3
C
201 205anti-parallel
Strand 4
C
210 213anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
287 288first strand
Strand 2
C
282 284anti-parallel
Strand 3
C
302 305anti-parallel
Strand 4
D
61 62anti-parallel
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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
32 36first strand
Strand 2
F
22 27anti-parallel
Strand 3
E
11 16anti-parallel
Strand 4
F
137 140anti-parallel
Strand 5
F
130 132anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
23 25first strand
Strand 2
E
33 35anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 40first strand
Strand 2
E
316 318anti-parallel
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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
42 43first strand
Strand 2
E
295 296parallel
Strand 3
E
308 309parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
57 59first strand
Strand 2
E
85 88parallel
Strand 3
E
267 270parallel
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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
99 100first strand
Strand 2
E
229 237parallel
Strand 3
E
176 184anti-parallel
Strand 4
E
256 259anti-parallel
Strand 5
E
119 121anti-parallel
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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
99 100first strand
Strand 2
E
229 237parallel
Strand 3
E
176 184anti-parallel
Strand 4
E
251 254anti-parallel
Strand 5
E
150 152anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
129 130first strand
Strand 2
E
154 155anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
135 139first strand
Strand 2
E
144 145anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
164 169first strand
Strand 2
E
242 249anti-parallel
Strand 3
E
201 205anti-parallel
Strand 4
E
210 213anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
287 288first strand
Strand 2
E
282 284anti-parallel
Strand 3
E
302 305anti-parallel
Strand 4
F
61 62anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
33 37first strand
Strand 2
G
48 55anti-parallel
Strand 3
G
108 113anti-parallel
Strand 4
G
98 103anti-parallel
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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
41 42first strand
Strand 2
G
149 153parallel
Strand 3
G
122 129anti-parallel
Strand 4
G
64 69anti-parallel
Strand 5
G
75 81anti-parallel
Strand 6
G
88 90anti-parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
41 42first strand
Strand 2
G
149 153parallel
Strand 3
G
122 129anti-parallel
Strand 4
G
142 145anti-parallel
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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
52 55first strand
Strand 2
H
144 148parallel
Strand 3
H
127 132anti-parallel
Strand 4
H
75 80anti-parallel
Strand 5
H
87 91anti-parallel
Strand 6
H
95 96anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
52 55first strand
Strand 2
H
144 148parallel
Strand 3
H
127 132anti-parallel
Strand 4
H
139 140anti-parallel
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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
61 66first strand
Strand 2
H
112 117anti-parallel
Strand 3
H
104 109anti-parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
33 37first strand
Strand 2
I
48 55anti-parallel
Strand 3
I
108 113anti-parallel
Strand 4
I
98 103anti-parallel
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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
41 42first strand
Strand 2
I
149 153parallel
Strand 3
I
122 129anti-parallel
Strand 4
I
64 69anti-parallel
Strand 5
I
75 81anti-parallel
Strand 6
I
88 90anti-parallel
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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
41 42first strand
Strand 2
I
149 153parallel
Strand 3
I
122 129anti-parallel
Strand 4
I
142 145anti-parallel
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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
52 55first strand
Strand 2
J
144 148parallel
Strand 3
J
127 132anti-parallel
Strand 4
J
75 80anti-parallel
Strand 5
J
87 91anti-parallel
Strand 6
J
95 96anti-parallel
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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
61 66first strand
Strand 2
J
112 117anti-parallel
Strand 3
J
104 109anti-parallel
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