Analysis of interatomic Contacts of Structural Units in PDB entry:
7WVP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WVP entry

There are 4 chains in PDB entry 7WVP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 19	ASP 615
B	GLN 14	SER 1147
C	GLN 14	SER 1147
D	GLN 14	SER 1147

There are 81 helices in PDB entry 7WVP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	42	Right-handed alpha
Helix 2	AA2	A	43	49	Right-handed alpha
Helix 3	AA3	A	59	79	Right-handed alpha
Helix 4	AA4	A	90	98	Right-handed alpha
Helix 5	AA5	A	113	122	Right-handed alpha
Helix 6	AA6	A	124	129	Right-handed alpha
Helix 7	AA7	A	150	155	Right-handed alpha
Helix 8	AA8	A	157	167	Right-handed alpha
Helix 9	AA9	A	167	172	Right-handed alpha
Helix 10	AB1	A	180	193	Right-handed alpha
Helix 11	AB2	A	221	231	Right-handed alpha
Helix 12	AB3	A	233	247	Right-handed alpha
Helix 13	AB4	A	265	267	Right-handed 310
Helix 14	AB5	A	275	279	Right-handed 310
Helix 15	AB6	A	305	317	Right-handed alpha
Helix 16	AB7	A	324	328	Right-handed 310
Helix 17	AB8	A	365	376	Right-handed alpha
Helix 18	AB9	A	378	385	Right-handed alpha
Helix 19	AC1	A	399	404	Right-handed alpha
Helix 20	AC2	A	406	411	Right-handed alpha
Helix 21	AC3	A	414	422	Right-handed alpha
Helix 22	AC4	A	434	444	Right-handed alpha
Helix 23	AC5	A	449	464	Right-handed alpha
Helix 24	AC6	A	476	481	Right-handed alpha
Helix 25	AC7	A	503	508	Right-handed alpha
Helix 26	AC8	A	512	516	Right-handed 310
Helix 27	AC9	A	517	533	Right-handed alpha
Helix 28	AD1	A	547	550	Right-handed 310
Helix 29	AD2	A	551	559	Right-handed alpha
Helix 30	AD3	A	565	570	Right-handed alpha
Helix 31	AD4	A	581	586	Right-handed alpha
Helix 32	AD5	A	588	594	Right-handed alpha
Helix 33	AD6	B	294	304	Right-handed alpha
Helix 34	AD7	B	338	343	Right-handed alpha
Helix 35	AD8	B	746	754	Right-handed alpha
Helix 36	AD9	B	758	768	Right-handed alpha
Helix 37	AE1	B	770	782	Right-handed alpha
Helix 38	AE2	B	818	826	Right-handed alpha
Helix 39	AE3	B	866	884	Right-handed alpha
Helix 40	AE4	B	897	908	Right-handed alpha
Helix 41	AE5	B	913	918	Right-handed alpha
Helix 42	AE6	B	919	941	Right-handed alpha
Helix 43	AE7	B	942	944	Right-handed 310
Helix 44	AE8	B	945	965	Right-handed alpha
Helix 45	AE9	B	976	984	Right-handed alpha
Helix 46	AF1	B	985	1032	Right-handed alpha
Helix 47	AF2	C	296	304	Right-handed alpha
Helix 48	AF3	C	365	370	Right-handed alpha
Helix 49	AF4	C	383	387	Right-handed 310
Helix 50	AF5	C	417	422	Right-handed alpha
Helix 51	AF6	C	634	638	Right-handed 310
Helix 52	AF7	C	737	743	Right-handed alpha
Helix 53	AF8	C	746	751	Right-handed alpha
Helix 54	AF9	C	758	782	Right-handed alpha
Helix 55	AG1	C	819	824	Right-handed alpha
Helix 56	AG2	C	866	884	Right-handed alpha
Helix 57	AG3	C	897	906	Right-handed alpha
Helix 58	AG4	C	907	910	Right-handed 310
Helix 59	AG5	C	913	918	Right-handed alpha
Helix 60	AG6	C	919	941	Right-handed alpha
Helix 61	AG7	C	942	944	Right-handed 310
Helix 62	AG8	C	945	965	Right-handed alpha
Helix 63	AG9	C	976	984	Right-handed alpha
Helix 64	AH1	C	985	1032	Right-handed alpha
Helix 65	AH2	C	1141	1146	Right-handed alpha
Helix 66	AH3	D	294	304	Right-handed alpha
Helix 67	AH4	D	338	343	Right-handed alpha
Helix 68	AH5	D	404	408	Right-handed 310
Helix 69	AH6	D	502	506	Right-handed 310
Helix 70	AH7	D	737	742	Right-handed alpha
Helix 71	AH8	D	753	757	Right-handed 310
Helix 72	AH9	D	758	782	Right-handed alpha
Helix 73	AI1	D	816	826	Right-handed alpha
Helix 74	AI2	D	866	884	Right-handed alpha
Helix 75	AI3	D	897	908	Right-handed alpha
Helix 76	AI4	D	913	918	Right-handed alpha
Helix 77	AI5	D	919	941	Right-handed alpha
Helix 78	AI6	D	942	944	Right-handed 310
Helix 79	AI7	D	945	965	Right-handed alpha
Helix 80	AI8	D	976	982	Right-handed alpha
Helix 81	AI9	D	988	1032	Right-handed alpha

There are 47 sheets in PDB entry 7WVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	487	488	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	78	79	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	61	67	anti-parallel
Strand 3	B	263	267	anti-parallel
Strand 4	B	89	96	anti-parallel
Strand 5	B	189	195	anti-parallel
Strand 6	B	200	208	anti-parallel
Strand 7	B	224	230	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	D	565	567	parallel
Strand 3	D	573	576	anti-parallel
Strand 4	D	585	588	anti-parallel
Strand 5	D	547	554	anti-parallel
Strand 6	D	539	542	anti-parallel
Strand 7	D	325	327	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	243	anti-parallel
Strand 3	B	140	141	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	243	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	116	121	anti-parallel
Strand 5	B	126	131	anti-parallel
Strand 6	B	168	171	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	319	first strand
Strand 2	B	592	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	650	651	anti-parallel
Strand 5	B	642	643	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	327	first strand
Strand 2	B	538	542	parallel
Strand 3	B	547	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	573	577	anti-parallel
Strand 6	B	565	567	anti-parallel
Strand 7	C	42	43	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	394	397	anti-parallel
Strand 3	B	508	516	anti-parallel
Strand 4	B	432	437	anti-parallel
Strand 5	B	376	377	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	394	397	anti-parallel
Strand 3	B	508	516	anti-parallel
Strand 4	B	400	402	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	453	first strand
Strand 2	B	493	494	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	691	696	parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1077	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1077	anti-parallel
Strand 3	B	1094	1097	anti-parallel
Strand 4	B	1102	1105	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	735	first strand
Strand 2	B	859	861	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1125	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1081	1082	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	60	67	anti-parallel
Strand 3	C	263	267	anti-parallel
Strand 4	C	90	96	anti-parallel
Strand 5	C	188	197	anti-parallel
Strand 6	C	200	208	anti-parallel
Strand 7	C	222	230	anti-parallel
Strand 8	C	36	37	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	240	anti-parallel
Strand 3	C	103	107	anti-parallel
Strand 4	C	116	121	anti-parallel
Strand 5	C	126	131	anti-parallel
Strand 6	C	168	170	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	245	first strand
Strand 2	C	259	260	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	317	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	609	613	anti-parallel
Strand 4	C	648	650	anti-parallel
Strand 5	C	643	644	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	328	first strand
Strand 2	C	539	543	parallel
Strand 3	C	546	554	anti-parallel
Strand 4	C	584	588	anti-parallel
Strand 5	C	573	577	anti-parallel
Strand 6	C	565	567	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	395	403	anti-parallel
Strand 3	C	507	512	anti-parallel
Strand 4	C	432	435	anti-parallel
Strand 5	C	376	379	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	524	525	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	691	696	parallel
Strand 3	C	670	675	anti-parallel
Strand 4	C	664	667	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	712	727	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	712	727	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1094	1097	anti-parallel
Strand 4	C	1102	1105	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	734	736	first strand
Strand 2	C	858	860	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1125	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	23	first strand
Strand 2	D	78	79	parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	D	61	67	anti-parallel
Strand 3	D	263	267	anti-parallel
Strand 4	D	89	96	anti-parallel
Strand 5	D	189	195	anti-parallel
Strand 6	D	200	208	anti-parallel
Strand 7	D	224	230	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	55	first strand
Strand 2	D	271	278	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	85	first strand
Strand 2	D	237	243	anti-parallel
Strand 3	D	140	141	parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	85	first strand
Strand 2	D	237	243	anti-parallel
Strand 3	D	101	107	anti-parallel
Strand 4	D	116	121	anti-parallel
Strand 5	D	126	131	anti-parallel
Strand 6	D	168	171	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	319	first strand
Strand 2	D	592	599	anti-parallel
Strand 3	D	609	613	anti-parallel
Strand 4	D	649	651	anti-parallel
Strand 5	D	642	644	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	356	358	first strand
Strand 2	D	394	397	anti-parallel
Strand 3	D	508	516	anti-parallel
Strand 4	D	432	437	anti-parallel
Strand 5	D	376	377	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	356	358	first strand
Strand 2	D	394	397	anti-parallel
Strand 3	D	508	516	anti-parallel
Strand 4	D	400	402	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	454	first strand
Strand 2	D	492	494	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	474	first strand
Strand 2	D	488	489	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	654	655	first strand
Strand 2	D	691	696	parallel
Strand 3	D	670	675	anti-parallel
Strand 4	D	664	667	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	711	715	first strand
Strand 2	D	1072	1077	anti-parallel
Strand 3	D	1094	1097	anti-parallel
Strand 4	D	1102	1105	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	718	728	first strand
Strand 2	D	1059	1069	anti-parallel
Strand 3	D	1047	1056	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	734	736	first strand
Strand 2	D	858	860	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1120	1125	first strand
Strand 2	D	1086	1090	anti-parallel
Strand 3	D	1081	1082	anti-parallel
Strand 4	D	1133	1134	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WVP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WVP