Analysis of interatomic Contacts of Structural Units in PDB entry:
7WVU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WVU entry

There are 5 chains in PDB entry 7WVU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	SER 19	LEU 316
A	LEU 5	PHE 354
B	ASP 5	ASN 340
C	ILE 9	ARG 62
L	LEU 2	PHE 3

There are 25 helices in PDB entry 7WVU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	21	53	Right-handed alpha
Helix 2	AA2	R	58	88	Right-handed alpha
Helix 3	AA3	R	94	129	Right-handed alpha
Helix 4	AA4	R	129	136	Right-handed alpha
Helix 5	AA5	R	138	163	Right-handed alpha
Helix 6	AA6	R	186	211	Right-handed alpha
Helix 7	AA7	R	212	231	Right-handed alpha
Helix 8	AA8	R	237	267	Right-handed alpha
Helix 9	AA9	R	267	272	Right-handed alpha
Helix 10	AB1	R	276	302	Right-handed alpha
Helix 11	AB2	R	305	316	Right-handed alpha
Helix 12	AB3	A	6	33	Right-handed alpha
Helix 13	AB4	A	42	53	Right-handed alpha
Helix 14	AB5	A	207	218	Right-handed 310
Helix 15	AB6	A	242	255	Right-handed alpha
Helix 16	AB7	A	256	260	Right-handed 310
Helix 17	AB8	A	270	281	Right-handed alpha
Helix 18	AB9	A	282	286	Right-handed 310
Helix 19	AC1	A	295	309	Right-handed alpha
Helix 20	AC2	A	327	352	Right-handed alpha
Helix 21	AC3	B	6	26	Right-handed alpha
Helix 22	AC4	B	29	34	Right-handed alpha
Helix 23	AC5	B	35	37	Right-handed 310
Helix 24	AC6	C	10	22	Right-handed alpha
Helix 25	AC7	C	29	44	Right-handed alpha

There are 8 sheets in PDB entry 7WVU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	220	226	parallel
Strand 5	A	264	269	parallel
Strand 6	A	320	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	329	anti-parallel
Strand 4	B	318	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WVU

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WVU