Analysis of interatomic Contacts of Structural Units in PDB entry:
7WVV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WVV entry

There are 5 chains in PDB entry 7WVV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	LEU 2	ILE 5
R	SER 19	SER 316
A	SER 6	PHE 355
B	LEU 7	ASN 340
C	ALA 12	ARG 62

There are 26 helices in PDB entry 7WVV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	20	55	Right-handed alpha
Helix 2	AA2	R	58	77	Right-handed alpha
Helix 3	AA3	R	77	86	Right-handed alpha
Helix 4	AA4	R	94	129	Right-handed alpha
Helix 5	AA5	R	129	137	Right-handed alpha
Helix 6	AA6	R	138	163	Right-handed alpha
Helix 7	AA7	R	180	185	Right-handed alpha
Helix 8	AA8	R	186	210	Right-handed alpha
Helix 9	AA9	R	210	231	Right-handed alpha
Helix 10	AB1	R	237	267	Right-handed alpha
Helix 11	AB2	R	267	274	Right-handed alpha
Helix 12	AB3	R	278	303	Right-handed alpha
Helix 13	AB4	R	306	316	Right-handed alpha
Helix 14	AB5	A	7	32	Right-handed alpha
Helix 15	AB6	A	45	53	Right-handed alpha
Helix 16	AB7	A	212	217	Right-handed 310
Helix 17	AB8	A	242	256	Right-handed alpha
Helix 18	AB9	A	257	261	Right-handed 310
Helix 19	AC1	A	271	282	Right-handed alpha
Helix 20	AC2	A	296	311	Right-handed alpha
Helix 21	AC3	A	330	352	Right-handed alpha
Helix 22	AC4	B	8	26	Right-handed alpha
Helix 23	AC5	B	29	34	Right-handed alpha
Helix 24	AC6	C	13	24	Right-handed alpha
Helix 25	AC7	C	29	45	Right-handed alpha
Helix 26	AC8	C	46	48	Right-handed 310

There are 9 sheets in PDB entry 7WVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	167	168	first strand
Strand 2	R	174	175	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	192	first strand
Strand 2	A	195	201	anti-parallel
Strand 3	A	33	39	parallel
Strand 4	A	221	227	parallel
Strand 5	A	264	270	parallel
Strand 6	A	323	324	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	259	265	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	295	298	anti-parallel
Strand 4	B	304	307	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WVV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WVV