Analysis of interatomic Contacts of Structural Units in PDB entry:
7WWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WWP entry

There is 1 chain in PDB entry 7WWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 105ALA 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7WWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
108 116Right-handed alpha
Helix 2
AA2
A
148 154Right-handed alpha
Helix 3
AA3
A
164 171Right-handed alpha
Helix 4
AA4
A
230 245Right-handed alpha
Helix 5
AA5
A
292 302Right-handed alpha
Helix 6
AA6
A
337 351Right-handed alpha
Helix 7
AA7
A
388 397Right-handed alpha
Helix 8
AA8
A
476 480Right-handed 310
Helix 9
AA9
A
484 495Right-handed alpha
Helix 10
AB1
A
499 505Right-handed alpha
Helix 11
AB2
A
506 516Right-handed alpha
Helix 12
AB3
A
525 535Right-handed alpha
Helix 13
AB4
A
536 545Right-handed alpha
Helix 14
AB5
A
546 562Right-handed alpha
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There are 6 sheets in PDB entry 7WWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
220 221parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
424 427parallel
Strand 3
A
437 439anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 228first strand
Strand 2
A
266 274parallel
Strand 3
A
249 258anti-parallel
Strand 4
A
306 313anti-parallel
Strand 5
A
368 374parallel
Strand 6
A
380 387anti-parallel
Strand 7
A
449 455anti-parallel
Strand 8
A
225 228parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 281first strand
Strand 2
A
284 287anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 354first strand
Strand 2
A
362 365anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 403first strand
Strand 2
A
406 412anti-parallel
Strand 3
A
443 444anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il