Analysis of interatomic Contacts of Structural Units in PDB entry:
7WWV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WWV entry

There are 11 chains in PDB entry 7WWV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 179
B	MET 1	ASP 248
C	LYS 3	GLY 303
D	LYS 3	GLY 303
E	LYS 3	GLY 303
F	LYS 3	GLY 303
G	LYS 3	GLY 303
H	LYS 3	GLY 303
M	U 2	U 40
O	T 3	C 48
N	G 1	G 32

There are 56 helices in PDB entry 7WWV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	12	Right-handed alpha
Helix 2	AA2	A	48	52	Right-handed 310
Helix 3	AA3	A	61	67	Right-handed alpha
Helix 4	AA4	A	70	77	Right-handed alpha
Helix 5	AA5	A	82	91	Right-handed alpha
Helix 6	AA6	A	121	133	Right-handed alpha
Helix 7	AA7	A	148	152	Right-handed 310
Helix 8	AA8	A	153	159	Right-handed alpha
Helix 9	AA9	B	28	44	Right-handed alpha
Helix 10	AB1	B	111	122	Right-handed alpha
Helix 11	AB2	B	147	154	Right-handed alpha
Helix 12	AB3	B	169	178	Right-handed alpha
Helix 13	AB4	B	221	223	Right-handed 310
Helix 14	AB5	B	225	229	Right-handed 310
Helix 15	AB6	C	98	107	Right-handed alpha
Helix 16	AB7	C	112	125	Right-handed alpha
Helix 17	AB8	C	130	134	Right-handed 310
Helix 18	AB9	C	166	178	Right-handed alpha
Helix 19	AC1	C	225	234	Right-handed alpha
Helix 20	AC2	C	269	279	Right-handed alpha
Helix 21	AC3	C	284	297	Right-handed alpha
Helix 22	AC4	D	98	107	Right-handed alpha
Helix 23	AC5	D	111	125	Right-handed alpha
Helix 24	AC6	D	130	134	Right-handed 310
Helix 25	AC7	D	164	178	Right-handed alpha
Helix 26	AC8	D	225	234	Right-handed alpha
Helix 27	AC9	D	269	279	Right-handed alpha
Helix 28	AD1	D	284	297	Right-handed alpha
Helix 29	AD2	E	98	107	Right-handed alpha
Helix 30	AD3	E	111	125	Right-handed alpha
Helix 31	AD4	E	130	134	Right-handed 310
Helix 32	AD5	E	163	178	Right-handed alpha
Helix 33	AD6	E	225	234	Right-handed alpha
Helix 34	AD7	E	269	279	Right-handed alpha
Helix 35	AD8	E	284	297	Right-handed alpha
Helix 36	AD9	F	98	107	Right-handed alpha
Helix 37	AE1	F	111	125	Right-handed alpha
Helix 38	AE2	F	130	134	Right-handed 310
Helix 39	AE3	F	163	178	Right-handed alpha
Helix 40	AE4	F	225	234	Right-handed alpha
Helix 41	AE5	F	269	278	Right-handed alpha
Helix 42	AE6	F	284	297	Right-handed alpha
Helix 43	AE7	G	98	107	Right-handed alpha
Helix 44	AE8	G	111	125	Right-handed alpha
Helix 45	AE9	G	130	134	Right-handed 310
Helix 46	AF1	G	164	178	Right-handed alpha
Helix 47	AF2	G	225	234	Right-handed alpha
Helix 48	AF3	G	269	279	Right-handed alpha
Helix 49	AF4	G	284	297	Right-handed alpha
Helix 50	AF5	H	98	107	Right-handed alpha
Helix 51	AF6	H	111	125	Right-handed alpha
Helix 52	AF7	H	130	134	Right-handed 310
Helix 53	AF8	H	166	178	Right-handed alpha
Helix 54	AF9	H	225	234	Right-handed alpha
Helix 55	AG1	H	269	279	Right-handed alpha
Helix 56	AG2	H	284	297	Right-handed alpha

There are 37 sheets in PDB entry 7WWV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	45	47	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	19	20	anti-parallel
Strand 3	A	119	120	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	112	117	anti-parallel
Strand 3	B	205	219	parallel
Strand 4	B	159	163	anti-parallel
Strand 5	B	47	59	anti-parallel
Strand 6	B	93	104	anti-parallel
Strand 7	B	3	16	anti-parallel
Strand 8	B	138	141	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	126	first strand
Strand 2	B	129	133	anti-parallel
Strand 3	B	3	16	anti-parallel
Strand 4	B	93	104	anti-parallel
Strand 5	B	47	59	anti-parallel
Strand 6	B	159	163	anti-parallel
Strand 7	B	205	219	anti-parallel
Strand 8	B	180	191	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	142	first strand
Strand 2	A	163	168	anti-parallel
Strand 3	B	23	25	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	233	first strand
Strand 2	B	239	241	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	299	300	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	76	86	anti-parallel
Strand 3	C	22	26	anti-parallel
Strand 4	C	35	36	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	76	86	anti-parallel
Strand 3	C	182	191	anti-parallel
Strand 4	C	140	144	anti-parallel
Strand 5	C	149	152	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	47	first strand
Strand 2	C	60	65	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	218	first strand
Strand 2	C	221	222	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	255	first strand
Strand 2	C	260	261	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	299	300	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	18	first strand
Strand 2	D	77	86	anti-parallel
Strand 3	D	21	25	anti-parallel
Strand 4	D	182	190	first strand
Strand 5	D	140	145	anti-parallel
Strand 6	D	148	152	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	36	first strand
Strand 2	D	21	25	anti-parallel
Strand 3	D	77	86	anti-parallel
Strand 4	D	221	224	first strand
Strand 5	D	217	218	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	47	first strand
Strand 2	D	60	65	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	255	first strand
Strand 2	D	260	261	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	299	300	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	76	86	anti-parallel
Strand 3	E	21	26	anti-parallel
Strand 4	E	182	190	first strand
Strand 5	E	140	145	anti-parallel
Strand 6	E	148	152	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	21	26	anti-parallel
Strand 3	E	76	86	anti-parallel
Strand 4	E	221	224	first strand
Strand 5	E	217	218	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	46	first strand
Strand 2	E	61	65	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	254	255	first strand
Strand 2	E	260	261	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	299	300	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	18	first strand
Strand 2	F	76	86	anti-parallel
Strand 3	F	22	26	anti-parallel
Strand 4	F	35	36	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	18	first strand
Strand 2	F	76	86	anti-parallel
Strand 3	F	182	190	anti-parallel
Strand 4	F	140	144	anti-parallel
Strand 5	F	149	152	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	47	first strand
Strand 2	F	60	66	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	218	first strand
Strand 2	F	221	222	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	299	300	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	18	first strand
Strand 2	G	76	86	anti-parallel
Strand 3	G	21	26	anti-parallel
Strand 4	G	182	190	first strand
Strand 5	G	140	145	anti-parallel
Strand 6	G	148	152	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	36	first strand
Strand 2	G	21	26	anti-parallel
Strand 3	G	76	86	anti-parallel
Strand 4	G	221	224	first strand
Strand 5	G	217	218	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	46	first strand
Strand 2	G	61	66	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	254	255	first strand
Strand 2	G	260	261	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	299	302	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	18	first strand
Strand 2	H	76	86	anti-parallel
Strand 3	H	21	26	anti-parallel
Strand 4	H	182	190	first strand
Strand 5	H	140	144	anti-parallel
Strand 6	H	149	152	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	36	first strand
Strand 2	H	21	26	anti-parallel
Strand 3	H	76	86	anti-parallel
Strand 4	H	221	224	first strand
Strand 5	H	217	218	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	47	first strand
Strand 2	H	60	66	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	254	255	first strand
Strand 2	H	260	261	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WWV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WWV