Analysis of interatomic Contacts of Structural Units in PDB entry:
7WYB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WYB entry

There are 5 chains in PDB entry 7WYB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 2	LEU 353
C	SER 2	ASN 340
D	ASN 5	ARG 62
E	VAL 2	LEU 249
R	THR 923	THR 1208

There are 32 helices in PDB entry 7WYB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	8	30	Right-handed alpha
Helix 2	AA2	B	45	54	Right-handed alpha
Helix 3	AA3	B	207	212	Right-handed alpha
Helix 4	AA4	B	213	216	Right-handed 310
Helix 5	AA5	B	241	255	Right-handed alpha
Helix 6	AA6	B	256	260	Right-handed 310
Helix 7	AA7	B	271	279	Right-handed alpha
Helix 8	AA8	B	295	309	Right-handed alpha
Helix 9	AA9	B	328	331	Right-handed 310
Helix 10	AB1	B	332	348	Right-handed alpha
Helix 11	AB2	C	3	26	Right-handed alpha
Helix 12	AB3	C	29	33	Right-handed 310
Helix 13	AB4	D	6	24	Right-handed alpha
Helix 14	AB5	D	29	43	Right-handed alpha
Helix 15	AB6	D	44	48	Right-handed 310
Helix 16	AB7	E	28	32	Right-handed 310
Helix 17	AB8	E	87	91	Right-handed 310
Helix 18	AB9	R	924	929	Right-handed 310
Helix 19	AC1	R	940	956	Right-handed alpha
Helix 20	AC2	R	958	970	Right-handed alpha
Helix 21	AC3	R	971	974	Right-handed 310
Helix 22	AC4	R	975	999	Right-handed alpha
Helix 23	AC5	R	1007	1038	Right-handed alpha
Helix 24	AC6	R	1047	1070	Right-handed alpha
Helix 25	AC7	R	1088	1091	Right-handed 310
Helix 26	AC8	R	1092	1099	Right-handed alpha
Helix 27	AC9	R	1099	1117	Right-handed alpha
Helix 28	AD1	R	1144	1154	Right-handed alpha
Helix 29	AD2	R	1155	1162	Right-handed 310
Helix 30	AD3	R	1169	1181	Right-handed alpha
Helix 31	AD4	R	1182	1193	Right-handed alpha
Helix 32	AD5	R	1195	1206	Right-handed alpha

There are 12 sheets in PDB entry 7WYB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	191	first strand
Strand 2	B	194	200	anti-parallel
Strand 3	B	34	39	parallel
Strand 4	B	220	226	parallel
Strand 5	B	263	269	parallel
Strand 6	B	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	336	339	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	121	125	anti-parallel
Strand 4	C	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	153	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	165	169	anti-parallel
Strand 4	C	176	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	191	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	207	212	anti-parallel
Strand 4	C	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	241	245	anti-parallel
Strand 3	C	250	253	anti-parallel
Strand 4	C	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	277	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	294	298	anti-parallel
Strand 4	C	305	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	15	25	anti-parallel
Strand 3	E	78	86	anti-parallel
Strand 4	E	69	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	144	first strand
Strand 2	E	157	163	anti-parallel
Strand 3	E	213	218	anti-parallel
Strand 4	E	206	209	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	150	first strand
Strand 2	E	245	248	parallel
Strand 3	E	227	233	anti-parallel
Strand 4	E	176	181	anti-parallel
Strand 5	E	188	192	anti-parallel
Strand 6	E	196	197	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WYB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WYB