Analysis of interatomic Contacts of Structural Units in PDB entry:
7WYI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WYI entry

There are 15 chains in PDB entry 7WYI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 12	GLY 751
B	THR 3	PHE 734
C	ALA 2	TYR 81
D	TRP 53	ILE 196
E	GLY 36	ALA 96
F	ASP 63	ARG 227
J	MET 1	PHE 39
1	LYS 35	PHE 228
3	LEU 61	PHE 262
7	VAL 29	ILE 240
8	ARG 27	LEU 243
Z	LYS 35	PHE 228
4	LEU 58	ARG 263
5	ARG 32	SER 256
6	ARG 29	PRO 257

There are143 helices in PDB entry 7WYI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	31	Right-handed 310
Helix 2	AA2	A	38	42	Right-handed 310
Helix 3	AA3	A	46	55	Right-handed alpha
Helix 4	AA4	A	58	63	Right-handed alpha
Helix 5	AA5	A	65	98	Right-handed alpha
Helix 6	AA6	A	100	107	Right-handed alpha
Helix 7	AA7	A	123	128	Right-handed 310
Helix 8	AA8	A	143	152	Right-handed alpha
Helix 9	AA9	A	155	183	Right-handed alpha
Helix 10	AB1	A	187	193	Right-handed alpha
Helix 11	AB2	A	193	220	Right-handed alpha
Helix 12	AB3	A	220	231	Right-handed alpha
Helix 13	AB4	A	239	246	Right-handed alpha
Helix 14	AB5	A	246	254	Right-handed alpha
Helix 15	AB6	A	255	260	Right-handed 310
Helix 16	AB7	A	261	266	Right-handed alpha
Helix 17	AB8	A	268	275	Right-handed 310
Helix 18	AB9	A	290	309	Right-handed alpha
Helix 19	AC1	A	321	329	Right-handed alpha
Helix 20	AC2	A	331	335	Right-handed 310
Helix 21	AC3	A	340	346	Right-handed alpha
Helix 22	AC4	A	348	374	Right-handed alpha
Helix 23	AC5	A	383	417	Right-handed alpha
Helix 24	AC6	A	425	466	Right-handed alpha
Helix 25	AC7	A	467	471	Right-handed 310
Helix 26	AC8	A	481	498	Right-handed alpha
Helix 27	AC9	A	507	511	Right-handed 310
Helix 28	AD1	A	529	556	Right-handed alpha
Helix 29	AD2	A	578	582	Right-handed 310
Helix 30	AD3	A	587	618	Right-handed alpha
Helix 31	AD4	A	634	639	Right-handed alpha
Helix 32	AD5	A	641	649	Right-handed alpha
Helix 33	AD6	A	649	659	Right-handed alpha
Helix 34	AD7	A	665	688	Right-handed alpha
Helix 35	AD8	A	689	707	Right-handed alpha
Helix 36	AD9	A	719	751	Right-handed alpha
Helix 37	AE1	B	10	15	Right-handed alpha
Helix 38	AE2	B	19	28	Right-handed alpha
Helix 39	AE3	B	31	35	Right-handed 310
Helix 40	AE4	B	39	73	Right-handed alpha
Helix 41	AE5	B	74	79	Right-handed alpha
Helix 42	AE6	B	98	107	Right-handed alpha
Helix 43	AE7	B	120	129	Right-handed alpha
Helix 44	AE8	B	132	159	Right-handed alpha
Helix 45	AE9	B	160	163	Right-handed 310
Helix 46	AF1	B	165	171	Right-handed alpha
Helix 47	AF2	B	172	182	Right-handed alpha
Helix 48	AF3	B	184	204	Right-handed alpha
Helix 49	AF4	B	223	229	Right-handed alpha
Helix 50	AF5	B	232	236	Right-handed 310
Helix 51	AF6	B	270	289	Right-handed alpha
Helix 52	AF7	B	301	309	Right-handed alpha
Helix 53	AF8	B	322	330	Right-handed alpha
Helix 54	AF9	B	330	356	Right-handed alpha
Helix 55	AG1	B	365	399	Right-handed alpha
Helix 56	AG2	B	400	405	Right-handed alpha
Helix 57	AG3	B	407	447	Right-handed alpha
Helix 58	AG4	B	449	453	Right-handed 310
Helix 59	AG5	B	458	469	Right-handed alpha
Helix 60	AG6	B	484	490	Right-handed alpha
Helix 61	AG7	B	491	493	Right-handed 310
Helix 62	AG8	B	494	504	Right-handed alpha
Helix 63	AG9	B	514	541	Right-handed alpha
Helix 64	AH1	B	550	555	Right-handed 310
Helix 65	AH2	B	563	567	Right-handed 310
Helix 66	AH3	B	572	605	Right-handed alpha
Helix 67	AH4	B	606	614	Right-handed alpha
Helix 68	AH5	B	616	625	Right-handed alpha
Helix 69	AH6	B	631	635	Right-handed 310
Helix 70	AH7	B	644	667	Right-handed alpha
Helix 71	AH8	B	668	686	Right-handed alpha
Helix 72	AH9	B	702	734	Right-handed alpha
Helix 73	AI1	C	44	48	Right-handed 310
Helix 74	AI2	C	52	58	Right-handed alpha
Helix 75	AI3	C	73	78	Right-handed alpha
Helix 76	AI4	D	76	81	Right-handed alpha
Helix 77	AI5	D	118	133	Right-handed alpha
Helix 78	AI6	D	192	196	Right-handed 310
Helix 79	AI7	F	73	92	Right-handed alpha
Helix 80	AI8	F	98	121	Right-handed alpha
Helix 81	AI9	F	136	143	Right-handed alpha
Helix 82	AJ1	F	149	176	Right-handed alpha
Helix 83	AJ2	F	179	186	Right-handed alpha
Helix 84	AJ3	F	188	199	Right-handed alpha
Helix 85	AJ4	F	201	212	Right-handed alpha
Helix 86	AJ5	J	2	10	Right-handed alpha
Helix 87	AJ6	J	10	33	Right-handed alpha
Helix 88	AJ7	1	67	99	Right-handed alpha
Helix 89	AJ8	1	107	112	Right-handed alpha
Helix 90	AJ9	1	126	148	Right-handed alpha
Helix 91	AK1	1	168	199	Right-handed alpha
Helix 92	AK2	1	201	212	Right-handed alpha
Helix 93	AK3	1	217	222	Right-handed alpha
Helix 94	AK4	3	83	114	Right-handed alpha
Helix 95	AK5	3	124	128	Right-handed 310
Helix 96	AK6	3	131	135	Right-handed 310
Helix 97	AK7	3	143	168	Right-handed alpha
Helix 98	AK8	3	181	186	Right-handed alpha
Helix 99	AK9	3	206	238	Right-handed alpha
Helix 100	AL1	3	241	252	Right-handed alpha
Helix 101	AL2	7	61	95	Right-handed alpha
Helix 102	AL3	7	101	113	Right-handed alpha
Helix 103	AL4	7	116	141	Right-handed alpha
Helix 104	AL5	7	179	212	Right-handed alpha
Helix 105	AL6	7	214	225	Right-handed alpha
Helix 106	AL7	8	42	47	Right-handed alpha
Helix 107	AL8	8	62	94	Right-handed alpha
Helix 108	AL9	8	103	114	Right-handed alpha
Helix 109	AM1	8	118	143	Right-handed alpha
Helix 110	AM2	8	144	149	Right-handed 310
Helix 111	AM3	8	155	159	Right-handed 310
Helix 112	AM4	8	181	183	Right-handed 310
Helix 113	AM5	8	184	213	Right-handed alpha
Helix 114	AM6	8	216	227	Right-handed alpha
Helix 115	AM7	8	232	236	Right-handed 310
Helix 116	AM8	Z	67	99	Right-handed alpha
Helix 117	AM9	Z	107	112	Right-handed alpha
Helix 118	AN1	Z	126	148	Right-handed alpha
Helix 119	AN2	Z	168	199	Right-handed alpha
Helix 120	AN3	Z	201	212	Right-handed alpha
Helix 121	AN4	Z	217	222	Right-handed alpha
Helix 122	AN5	4	89	122	Right-handed alpha
Helix 123	AN6	4	145	170	Right-handed alpha
Helix 124	AN7	4	195	199	Right-handed 310
Helix 125	AN8	4	208	237	Right-handed alpha
Helix 126	AN9	4	239	250	Right-handed alpha
Helix 127	AO1	4	255	263	Right-handed alpha
Helix 128	AO2	5	63	95	Right-handed alpha
Helix 129	AO3	5	99	103	Right-handed 310
Helix 130	AO4	5	117	142	Right-handed alpha
Helix 131	AO5	5	166	170	Right-handed 310
Helix 132	AO6	5	179	208	Right-handed alpha
Helix 133	AO7	5	210	221	Right-handed alpha
Helix 134	AO8	5	226	231	Right-handed alpha
Helix 135	AO9	6	60	92	Right-handed alpha
Helix 136	AP1	6	96	98	Right-handed 310
Helix 137	AP2	6	99	104	Right-handed alpha
Helix 138	AP3	6	109	134	Right-handed alpha
Helix 139	AP4	6	158	162	Right-handed 310
Helix 140	AP5	6	168	198	Right-handed alpha
Helix 141	AP6	6	200	211	Right-handed alpha
Helix 142	AP7	6	216	221	Right-handed alpha
Helix 143	AP8	6	252	256	Right-handed 310

There are 11 sheets in PDB entry 7WYI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	129	132	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	66	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	115	first strand
Strand 2	D	83	89	anti-parallel
Strand 3	D	137	141	anti-parallel
Strand 4	D	148	149	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	103	106	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	88	first strand
Strand 2	E	71	74	anti-parallel
Strand 3	E	56	62	anti-parallel
Strand 4	E	42	45	anti-parallel
Strand 5	E	93	94	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	116	118	first strand
Strand 2	1	121	123	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	116	118	first strand
Strand 2	Z	121	123	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	222	224	first strand
Strand 2	6	227	229	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WYI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WYI