Analysis of interatomic Contacts of Structural Units in PDB entry:
7X0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7X0C entry

There are 2 chains in PDB entry 7X0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 14PHE 419
B
 ARG 17PHE 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7X0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 27Right-handed alpha
Helix 2
AA2
A
40 61Right-handed alpha
Helix 3
AA3
A
79 84Right-handed alpha
Helix 4
AA4
A
137 145Right-handed alpha
Helix 5
AA5
A
162 167Right-handed 310
Helix 6
AA6
A
173 178Right-handed alpha
Helix 7
AA7
A
179 182Right-handed 310
Helix 8
AA8
A
188 196Right-handed alpha
Helix 9
AA9
A
207 223Right-handed alpha
Helix 10
AB1
A
236 252Right-handed alpha
Helix 11
AB2
A
279 288Right-handed alpha
Helix 12
AB3
A
303 307Right-handed 310
Helix 13
AB4
A
322 326Right-handed 310
Helix 14
AB5
A
334 340Right-handed alpha
Helix 15
AB6
A
340 351Right-handed alpha
Helix 16
AB7
A
367 374Right-handed 310
Helix 17
AB8
A
379 383Right-handed 310
Helix 18
AB9
A
391 394Right-handed 310
Helix 19
AC1
B
18 27Right-handed alpha
Helix 20
AC2
B
40 61Right-handed alpha
Helix 21
AC3
B
79 84Right-handed alpha
Helix 22
AC4
B
137 145Right-handed alpha
Helix 23
AC5
B
162 167Right-handed 310
Helix 24
AC6
B
173 178Right-handed alpha
Helix 25
AC7
B
179 182Right-handed 310
Helix 26
AC8
B
188 196Right-handed alpha
Helix 27
AC9
B
207 223Right-handed alpha
Helix 28
AD1
B
236 252Right-handed alpha
Helix 29
AD2
B
279 288Right-handed alpha
Helix 30
AD3
B
303 307Right-handed 310
Helix 31
AD4
B
322 326Right-handed 310
Helix 32
AD5
B
334 340Right-handed alpha
Helix 33
AD6
B
340 351Right-handed alpha
Helix 34
AD7
B
367 374Right-handed 310
Helix 35
AD8
B
379 383Right-handed 310
Helix 36
AD9
B
391 394Right-handed 310
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There are 6 sheets in PDB entry 7X0C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 103first strand
Strand 2
A
128 136anti-parallel
Strand 3
A
147 153anti-parallel
Strand 4
A
228 235parallel
Strand 5
A
267 272parallel
Strand 6
A
292 299parallel
Strand 7
A
317 321parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
185 187anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 398first strand
Strand 2
A
404 406anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 103first strand
Strand 2
B
128 136anti-parallel
Strand 3
B
147 153anti-parallel
Strand 4
B
228 235parallel
Strand 5
B
267 272parallel
Strand 6
B
292 299parallel
Strand 7
B
317 321parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 172first strand
Strand 2
B
185 187anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 398first strand
Strand 2
B
404 406anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il