Analysis of interatomic Contacts of Structural Units in PDB entry:
7X2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7X2J entry

There are 2 chains in PDB entry 7X2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
S
 ASN 321SER 516
B
 GLN 1SER 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 7X2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
S
324 330Right-handed alpha
Helix 2
AA2
S
336 340Right-handed 310
Helix 3
AA3
S
352 357Right-handed alpha
Helix 4
AA4
S
370 376Right-handed 310
Helix 5
AA5
S
392 397Right-handed 310
Helix 6
AA6
S
403 409Right-handed alpha
Helix 7
AA7
S
425 430Right-handed alpha
Helix 8
AA8
S
488 491Right-handed 310
Helix 9
AA9
B
28 32Right-handed 310
Helix 10
AB1
B
62 65Right-handed 310
Helix 11
AB2
B
87 91Right-handed 310
Helix 12
AB3
B
104 114Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 7X2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
341 345first strand
Strand 2
S
381 390anti-parallel
Strand 3
S
493 502anti-parallel
Strand 4
S
418 424anti-parallel
Strand 5
S
363 367anti-parallel
Strand 6
B
101 102anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
348 349first strand
Strand 2
S
510 511parallel
Strand 3
S
378 379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
439 441first strand
Strand 2
S
478 480anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
121 126parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
33 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
121 126parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
116 117anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il