Analysis of interatomic Contacts of Structural Units in PDB entry:
7X5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7X5M entry

There are 4 chains in PDB entry 7X5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 3 A 7
E
 A 3 A 7
B
 VAL 59GLU 228
F
 VAL 59GLU 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7X5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
77 86Right-handed alpha
Helix 2
AA2
B
107 115Right-handed alpha
Helix 3
AA3
B
129 144Right-handed alpha
Helix 4
AA4
B
170 177Right-handed alpha
Helix 5
AA5
B
178 180Right-handed 310
Helix 6
AA6
B
184 197Right-handed alpha
Helix 7
AA7
B
211 227Right-handed alpha
Helix 8
AA8
F
76 86Right-handed alpha
Helix 9
AA9
F
107 115Right-handed alpha
Helix 10
AB1
F
129 146Right-handed alpha
Helix 11
AB2
F
176 180Right-handed 310
Helix 12
AB3
F
184 191Right-handed alpha
Helix 13
AB4
F
192 197Right-handed alpha
Helix 14
AB5
F
209 227Right-handed alpha
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There are 2 sheets in PDB entry 7X5M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
63 66parallel
Strand 3
B
117 120parallel
Strand 4
B
150 151parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
91 92first strand
Strand 2
F
63 66parallel
Strand 3
F
117 120parallel
Strand 4
F
150 151parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il