Analysis of interatomic Contacts of Structural Units in PDB entry:
7X8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7X8Z entry

There are 3 chains in PDB entry 7X8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 334PRO 527
H
 GLU 1SER 120
L
 ASP 1ILE 112
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 7X8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
337 343Right-handed alpha
Helix 2
AA2
A
364 369Right-handed 310
Helix 3
AA3
A
405 411Right-handed 310
Helix 4
AA4
A
416 422Right-handed alpha
Helix 5
AA5
H
28 32Right-handed 310
Helix 6
AA6
H
87 91Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 7X8Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 358first strand
Strand 2
A
395 398anti-parallel
Strand 3
A
507 515anti-parallel
Strand 4
A
432 437anti-parallel
Strand 5
A
376 379anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 358first strand
Strand 2
A
395 398anti-parallel
Strand 3
A
507 515anti-parallel
Strand 4
A
400 403anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
524 525anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
492 494anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
115 119parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
34 37anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
39 40first strand
Strand 2
H
44 45anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 6first strand
Strand 2
L
22 25anti-parallel
Strand 3
L
76 80anti-parallel
Strand 4
L
69 71anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
59 60first strand
Strand 2
L
51 55anti-parallel
Strand 3
L
39 44anti-parallel
Strand 4
L
91 96anti-parallel
Strand 5
L
103 104anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
59 60first strand
Strand 2
L
51 55anti-parallel
Strand 3
L
39 44anti-parallel
Strand 4
L
91 96anti-parallel
Strand 5
L
108 109anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il