Analysis of interatomic Contacts of Structural Units in PDB entry:
7X99


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7X99 entry

There are 2 chains in PDB entry 7X99 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 304
B
 SER 2LYS 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 7X99. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 12Right-handed 310
Helix 2
AA2
A
13 34Right-handed alpha
Helix 3
AA3
A
53 67Right-handed alpha
Helix 4
AA4
A
75 79Right-handed 310
Helix 5
AA5
A
84 98Right-handed alpha
Helix 6
AA6
A
107 117Right-handed alpha
Helix 7
AA7
A
131 147Right-handed alpha
Helix 8
AA8
A
163 175Right-handed alpha
Helix 9
AA9
A
189 196Right-handed alpha
Helix 10
AB1
A
205 211Right-handed alpha
Helix 11
AB2
A
234 238Right-handed alpha
Helix 12
AB3
A
239 241Right-handed 310
Helix 13
AB4
A
243 249Right-handed alpha
Helix 14
AB5
A
269 275Right-handed alpha
Helix 15
AB6
A
279 299Right-handed alpha
Helix 16
AB7
A
300 303Right-handed 310
Helix 17
AB8
B
8 12Right-handed 310
Helix 18
AB9
B
13 33Right-handed alpha
Helix 19
AC1
B
53 67Right-handed alpha
Helix 20
AC2
B
75 79Right-handed 310
Helix 21
AC3
B
85 96Right-handed alpha
Helix 22
AC4
B
107 118Right-handed alpha
Helix 23
AC5
B
131 147Right-handed alpha
Helix 24
AC6
B
161 175Right-handed alpha
Helix 25
AC7
B
189 196Right-handed alpha
Helix 26
AC8
B
205 210Right-handed alpha
Helix 27
AC9
B
233 238Right-handed alpha
Helix 28
AD1
B
239 241Right-handed 310
Helix 29
AD2
B
243 249Right-handed alpha
Helix 30
AD3
B
269 275Right-handed alpha
Helix 31
AD4
B
279 299Right-handed alpha
Helix 32
AD5
B
300 303Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 7X99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
44 49parallel
Strand 3
A
100 104parallel
Strand 4
A
122 126parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
177 181parallel
Strand 3
A
153 157parallel
Strand 4
A
215 218parallel
Strand 5
A
255 258parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 74first strand
Strand 2
B
44 49parallel
Strand 3
B
100 104parallel
Strand 4
B
122 124parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 202first strand
Strand 2
B
177 181parallel
Strand 3
B
153 157parallel
Strand 4
B
215 218parallel
Strand 5
B
255 257parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il