Analysis of interatomic Contacts of Structural Units in PDB entry:
7XD9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7XD9 entry

There are 18 chains in PDB entry 7XD9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 267	LYS 887
B	A 998	C 1009
C	G 1093	U 1101
D	GLU 268	PHE 889
E	A 997	C 1009
F	G 1093	U 1101
G	ILE 267	PHE 889
H	A 998	C 1009
I	G 1093	U 1101
J	ILE 265	PHE 889
K	G 981	C 1009
L	G 1093	U 1101
M	ILE 267	ARG 890
N	G 981	C 1009
O	G 1093	U 1101
P	GLU 268	PHE 889
Q	A 998	C 1009
R	G 1093	U 1101

There are200 helices in PDB entry 7XD9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	273	287	Right-handed alpha
Helix 2	AA2	A	323	329	Right-handed alpha
Helix 3	AA3	A	330	334	Right-handed 310
Helix 4	AA4	A	335	340	Right-handed alpha
Helix 5	AA5	A	347	358	Right-handed alpha
Helix 6	AA6	A	367	387	Right-handed alpha
Helix 7	AA7	A	395	403	Right-handed alpha
Helix 8	AA8	A	413	417	Right-handed 310
Helix 9	AA9	A	421	427	Right-handed alpha
Helix 10	AB1	A	428	444	Right-handed alpha
Helix 11	AB2	A	478	490	Right-handed alpha
Helix 12	AB3	A	490	495	Right-handed alpha
Helix 13	AB4	A	499	504	Right-handed alpha
Helix 14	AB5	A	511	513	Right-handed 310
Helix 15	AB6	A	514	524	Right-handed alpha
Helix 16	AB7	A	537	542	Right-handed 310
Helix 17	AB8	A	543	552	Right-handed alpha
Helix 18	AB9	A	553	557	Right-handed 310
Helix 19	AC1	A	558	573	Right-handed alpha
Helix 20	AC2	A	605	627	Right-handed alpha
Helix 21	AC3	A	636	657	Right-handed alpha
Helix 22	AC4	A	671	677	Right-handed 310
Helix 23	AC5	A	678	684	Right-handed alpha
Helix 24	AC6	A	702	706	Right-handed 310
Helix 25	AC7	A	730	739	Right-handed alpha
Helix 26	AC8	A	748	750	Right-handed 310
Helix 27	AC9	A	751	766	Right-handed alpha
Helix 28	AD1	A	769	783	Right-handed alpha
Helix 29	AD2	A	805	818	Right-handed alpha
Helix 30	AD3	A	832	836	Right-handed 310
Helix 31	AD4	A	840	847	Right-handed alpha
Helix 32	AD5	A	853	862	Right-handed alpha
Helix 33	AD6	A	862	875	Right-handed alpha
Helix 34	AD7	A	882	886	Right-handed 310
Helix 35	AD8	D	273	288	Right-handed alpha
Helix 36	AD9	D	323	328	Right-handed alpha
Helix 37	AE1	D	329	334	Right-handed 310
Helix 38	AE2	D	335	340	Right-handed alpha
Helix 39	AE3	D	347	358	Right-handed alpha
Helix 40	AE4	D	367	387	Right-handed alpha
Helix 41	AE5	D	395	403	Right-handed alpha
Helix 42	AE6	D	413	417	Right-handed 310
Helix 43	AE7	D	421	427	Right-handed alpha
Helix 44	AE8	D	428	444	Right-handed alpha
Helix 45	AE9	D	478	490	Right-handed alpha
Helix 46	AF1	D	490	495	Right-handed alpha
Helix 47	AF2	D	499	504	Right-handed alpha
Helix 48	AF3	D	511	513	Right-handed 310
Helix 49	AF4	D	514	524	Right-handed alpha
Helix 50	AF5	D	537	542	Right-handed 310
Helix 51	AF6	D	543	552	Right-handed alpha
Helix 52	AF7	D	553	557	Right-handed 310
Helix 53	AF8	D	558	572	Right-handed alpha
Helix 54	AF9	D	605	627	Right-handed alpha
Helix 55	AG1	D	636	656	Right-handed alpha
Helix 56	AG2	D	671	677	Right-handed 310
Helix 57	AG3	D	678	684	Right-handed alpha
Helix 58	AG4	D	702	706	Right-handed 310
Helix 59	AG5	D	730	739	Right-handed alpha
Helix 60	AG6	D	748	750	Right-handed 310
Helix 61	AG7	D	751	766	Right-handed alpha
Helix 62	AG8	D	769	783	Right-handed alpha
Helix 63	AG9	D	805	818	Right-handed alpha
Helix 64	AH1	D	832	836	Right-handed 310
Helix 65	AH2	D	840	847	Right-handed alpha
Helix 66	AH3	D	853	862	Right-handed alpha
Helix 67	AH4	D	862	875	Right-handed alpha
Helix 68	AH5	D	882	886	Right-handed 310
Helix 69	AH6	G	273	288	Right-handed alpha
Helix 70	AH7	G	323	328	Right-handed alpha
Helix 71	AH8	G	329	334	Right-handed 310
Helix 72	AH9	G	335	340	Right-handed alpha
Helix 73	AI1	G	347	358	Right-handed alpha
Helix 74	AI2	G	367	387	Right-handed alpha
Helix 75	AI3	G	395	403	Right-handed alpha
Helix 76	AI4	G	413	417	Right-handed 310
Helix 77	AI5	G	421	427	Right-handed alpha
Helix 78	AI6	G	428	444	Right-handed alpha
Helix 79	AI7	G	478	490	Right-handed alpha
Helix 80	AI8	G	490	495	Right-handed alpha
Helix 81	AI9	G	499	504	Right-handed alpha
Helix 82	AJ1	G	511	513	Right-handed 310
Helix 83	AJ2	G	514	524	Right-handed alpha
Helix 84	AJ3	G	537	542	Right-handed 310
Helix 85	AJ4	G	543	552	Right-handed alpha
Helix 86	AJ5	G	553	557	Right-handed 310
Helix 87	AJ6	G	558	572	Right-handed alpha
Helix 88	AJ7	G	605	627	Right-handed alpha
Helix 89	AJ8	G	636	657	Right-handed alpha
Helix 90	AJ9	G	671	677	Right-handed 310
Helix 91	AK1	G	678	684	Right-handed alpha
Helix 92	AK2	G	702	706	Right-handed 310
Helix 93	AK3	G	730	739	Right-handed alpha
Helix 94	AK4	G	748	750	Right-handed 310
Helix 95	AK5	G	751	766	Right-handed alpha
Helix 96	AK6	G	769	783	Right-handed alpha
Helix 97	AK7	G	805	818	Right-handed alpha
Helix 98	AK8	G	832	836	Right-handed 310
Helix 99	AK9	G	840	847	Right-handed alpha
Helix 100	AL1	G	853	862	Right-handed alpha
Helix 101	AL2	G	862	875	Right-handed alpha
Helix 102	AL3	G	882	886	Right-handed 310
Helix 103	AL4	J	273	288	Right-handed alpha
Helix 104	AL5	J	323	329	Right-handed alpha
Helix 105	AL6	J	330	334	Right-handed 310
Helix 106	AL7	J	335	340	Right-handed alpha
Helix 107	AL8	J	347	358	Right-handed alpha
Helix 108	AL9	J	367	387	Right-handed alpha
Helix 109	AM1	J	395	403	Right-handed alpha
Helix 110	AM2	J	413	417	Right-handed 310
Helix 111	AM3	J	421	427	Right-handed alpha
Helix 112	AM4	J	428	444	Right-handed alpha
Helix 113	AM5	J	478	490	Right-handed alpha
Helix 114	AM6	J	490	495	Right-handed alpha
Helix 115	AM7	J	514	524	Right-handed alpha
Helix 116	AM8	J	537	542	Right-handed 310
Helix 117	AM9	J	543	552	Right-handed alpha
Helix 118	AN1	J	553	555	Right-handed 310
Helix 119	AN2	J	558	572	Right-handed alpha
Helix 120	AN3	J	605	627	Right-handed alpha
Helix 121	AN4	J	636	650	Right-handed alpha
Helix 122	AN5	J	650	656	Right-handed alpha
Helix 123	AN6	J	673	677	Right-handed 310
Helix 124	AN7	J	678	684	Right-handed alpha
Helix 125	AN8	J	702	706	Right-handed 310
Helix 126	AN9	J	730	739	Right-handed alpha
Helix 127	AO1	J	748	750	Right-handed 310
Helix 128	AO2	J	751	767	Right-handed alpha
Helix 129	AO3	J	769	783	Right-handed alpha
Helix 130	AO4	J	805	818	Right-handed alpha
Helix 131	AO5	J	832	836	Right-handed 310
Helix 132	AO6	J	840	847	Right-handed alpha
Helix 133	AO7	J	853	862	Right-handed alpha
Helix 134	AO8	J	862	875	Right-handed alpha
Helix 135	AO9	J	882	886	Right-handed 310
Helix 136	AP1	M	273	288	Right-handed alpha
Helix 137	AP2	M	323	329	Right-handed alpha
Helix 138	AP3	M	330	334	Right-handed 310
Helix 139	AP4	M	335	340	Right-handed alpha
Helix 140	AP5	M	347	358	Right-handed alpha
Helix 141	AP6	M	367	387	Right-handed alpha
Helix 142	AP7	M	395	403	Right-handed alpha
Helix 143	AP8	M	413	417	Right-handed 310
Helix 144	AP9	M	421	427	Right-handed alpha
Helix 145	AQ1	M	428	444	Right-handed alpha
Helix 146	AQ2	M	478	490	Right-handed alpha
Helix 147	AQ3	M	490	495	Right-handed alpha
Helix 148	AQ4	M	499	504	Right-handed alpha
Helix 149	AQ5	M	511	513	Right-handed 310
Helix 150	AQ6	M	514	525	Right-handed alpha
Helix 151	AQ7	M	537	542	Right-handed 310
Helix 152	AQ8	M	543	552	Right-handed alpha
Helix 153	AQ9	M	553	557	Right-handed 310
Helix 154	AR1	M	558	573	Right-handed alpha
Helix 155	AR2	M	605	627	Right-handed alpha
Helix 156	AR3	M	636	656	Right-handed alpha
Helix 157	AR4	M	671	677	Right-handed 310
Helix 158	AR5	M	678	684	Right-handed alpha
Helix 159	AR6	M	702	706	Right-handed 310
Helix 160	AR7	M	730	739	Right-handed alpha
Helix 161	AR8	M	751	766	Right-handed alpha
Helix 162	AR9	M	769	783	Right-handed alpha
Helix 163	AS1	M	805	818	Right-handed alpha
Helix 164	AS2	M	832	836	Right-handed 310
Helix 165	AS3	M	840	847	Right-handed alpha
Helix 166	AS4	M	853	862	Right-handed alpha
Helix 167	AS5	M	862	875	Right-handed alpha
Helix 168	AS6	M	882	890	Right-handed 310
Helix 169	AS7	P	277	288	Right-handed alpha
Helix 170	AS8	P	323	329	Right-handed alpha
Helix 171	AS9	P	330	334	Right-handed 310
Helix 172	AT1	P	335	340	Right-handed alpha
Helix 173	AT2	P	347	359	Right-handed alpha
Helix 174	AT3	P	367	386	Right-handed alpha
Helix 175	AT4	P	395	403	Right-handed alpha
Helix 176	AT5	P	413	417	Right-handed 310
Helix 177	AT6	P	421	427	Right-handed alpha
Helix 178	AT7	P	428	444	Right-handed alpha
Helix 179	AT8	P	478	490	Right-handed alpha
Helix 180	AT9	P	490	495	Right-handed alpha
Helix 181	AU1	P	499	504	Right-handed alpha
Helix 182	AU2	P	514	525	Right-handed alpha
Helix 183	AU3	P	537	542	Right-handed 310
Helix 184	AU4	P	543	552	Right-handed alpha
Helix 185	AU5	P	553	557	Right-handed 310
Helix 186	AU6	P	559	572	Right-handed alpha
Helix 187	AU7	P	605	626	Right-handed alpha
Helix 188	AU8	P	640	649	Right-handed alpha
Helix 189	AU9	P	650	655	Right-handed alpha
Helix 190	AV1	P	673	677	Right-handed 310
Helix 191	AV2	P	678	685	Right-handed alpha
Helix 192	AV3	P	730	739	Right-handed alpha
Helix 193	AV4	P	751	767	Right-handed alpha
Helix 194	AV5	P	769	783	Right-handed alpha
Helix 195	AV6	P	805	818	Right-handed alpha
Helix 196	AV7	P	832	836	Right-handed 310
Helix 197	AV8	P	840	847	Right-handed alpha
Helix 198	AV9	P	853	862	Right-handed alpha
Helix 199	AW1	P	862	875	Right-handed alpha
Helix 200	AW2	P	882	886	Right-handed 310

There are 38 sheets in PDB entry 7XD9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	310	first strand
Strand 2	A	589	595	anti-parallel
Strand 3	A	576	582	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	740	741	first strand
Strand 2	A	320	322	anti-parallel
Strand 3	A	745	747	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	343	first strand
Strand 2	A	460	462	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	456	first strand
Strand 2	A	473	477	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	661	first strand
Strand 2	A	664	667	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	717	first strand
Strand 2	A	723	728	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	789	first strand
Strand 2	A	795	797	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	310	first strand
Strand 2	D	587	595	anti-parallel
Strand 3	D	576	584	anti-parallel
Strand 4	D	452	456	parallel
Strand 5	D	473	476	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	740	741	first strand
Strand 2	D	320	322	anti-parallel
Strand 3	D	745	747	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	343	first strand
Strand 2	D	460	462	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	658	661	first strand
Strand 2	D	664	667	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	712	717	first strand
Strand 2	D	723	728	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	787	789	first strand
Strand 2	D	795	797	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	310	first strand
Strand 2	G	587	595	anti-parallel
Strand 3	G	576	584	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	740	741	first strand
Strand 2	G	320	322	anti-parallel
Strand 3	G	745	747	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	341	343	first strand
Strand 2	G	460	462	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	452	456	first strand
Strand 2	G	473	477	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	658	661	first strand
Strand 2	G	664	667	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	712	717	first strand
Strand 2	G	723	728	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	787	791	first strand
Strand 2	G	794	797	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	304	310	first strand
Strand 2	J	587	595	anti-parallel
Strand 3	J	576	584	anti-parallel
Strand 4	J	452	456	parallel
Strand 5	J	473	477	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	740	741	first strand
Strand 2	J	320	322	anti-parallel
Strand 3	J	745	747	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	341	343	first strand
Strand 2	J	460	462	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	658	661	first strand
Strand 2	J	664	667	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	712	717	first strand
Strand 2	J	723	728	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	787	789	first strand
Strand 2	J	795	797	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	304	310	first strand
Strand 2	M	587	595	anti-parallel
Strand 3	M	576	584	anti-parallel
Strand 4	M	452	456	parallel
Strand 5	M	473	476	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	740	741	first strand
Strand 2	M	320	322	anti-parallel
Strand 3	M	745	747	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	341	343	first strand
Strand 2	M	460	462	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	658	661	first strand
Strand 2	M	664	667	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	712	717	first strand
Strand 2	M	723	728	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	787	789	first strand
Strand 2	M	795	797	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	292	293	first strand
Strand 2	P	304	311	anti-parallel
Strand 3	P	587	595	anti-parallel
Strand 4	P	576	584	anti-parallel
Strand 5	P	452	456	parallel
Strand 6	P	473	477	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	740	741	first strand
Strand 2	P	320	322	anti-parallel
Strand 3	P	745	747	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	341	343	first strand
Strand 2	P	460	462	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	658	661	first strand
Strand 2	P	664	667	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	712	717	first strand
Strand 2	P	723	728	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	787	789	first strand
Strand 2	P	795	797	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7XD9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7XD9