Analysis of interatomic Contacts of Structural Units in PDB entry:
7XDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7XDQ entry

There is 1 chain in PDB entry 7XDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3CYS 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 7XDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 30Right-handed alpha
Helix 2
AA2
A
48 52Right-handed 310
Helix 3
AA3
A
66 77Right-handed alpha
Helix 4
AA4
A
92 102Right-handed alpha
Helix 5
AA5
A
105 111Right-handed alpha
Helix 6
AA6
A
113 118Right-handed 310
Helix 7
AA7
A
121 127Right-handed alpha
Helix 8
AA8
A
165 182Right-handed alpha
Helix 9
AA9
A
192 196Right-handed 310
Helix 10
AB1
A
208 225Right-handed alpha
Helix 11
AB2
A
236 246Right-handed alpha
Helix 12
AB3
A
253 265Right-handed alpha
Helix 13
AB4
A
267 277Right-handed alpha
Helix 14
AB5
A
294 296Right-handed 310
Helix 15
AB6
A
301 313Right-handed alpha
Helix 16
AB7
A
340 345Right-handed alpha
Helix 17
AB8
A
348 362Right-handed alpha
Helix 18
AB9
A
370 374Right-handed alpha
Helix 19
AC1
A
379 387Right-handed alpha
Helix 20
AC2
A
389 394Right-handed 310
Helix 21
AC3
A
398 407Right-handed alpha
Helix 22
AC4
A
408 424Right-handed alpha
Helix 23
AC5
A
425 429Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 7XDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
8 11parallel
Strand 3
A
365 369parallel
Strand 4
A
282 284parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
186 189parallel
Strand 3
A
227 228parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
158 160anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 141first strand
Strand 2
A
147 151anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
336 338anti-parallel
Strand 3
A
326 328anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 433first strand
Strand 2
A
440 447anti-parallel
Strand 3
A
450 457anti-parallel
Strand 4
A
462 469anti-parallel
Strand 5
A
474 479anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il