Analysis of interatomic Contacts of Structural Units in PDB entry:
7XF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7XF9 entry

There is 1 chain in PDB entry 7XF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7XF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 21Right-handed alpha
Helix 2
AA2
A
21 32Right-handed alpha
Helix 3
AA3
A
42 49Right-handed alpha
Helix 4
AA4
A
72 91Right-handed alpha
Helix 5
AA5
A
98 124Right-handed alpha
Helix 6
AA6
A
130 139Right-handed alpha
Helix 7
AA7
A
146 158Right-handed alpha
Helix 8
AA8
A
161 165Right-handed 310
Helix 9
AA9
A
174 199Right-handed alpha
Helix 10
AB1
A
201 225Right-handed alpha
Helix 11
AB2
A
249 258Right-handed alpha
Helix 12
AB3
A
263 265Right-handed 310
Helix 13
AB4
A
304 318Right-handed alpha
Helix 14
AB5
A
345 351Right-handed alpha
Helix 15
AB6
A
358 365Right-handed alpha
Helix 16
AB7
A
412 418Right-handed alpha
Helix 17
AB8
A
427 429Right-handed 310
Helix 18
AB9
A
430 435Right-handed alpha
Helix 19
AC1
A
436 439Right-handed 310
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There are 3 sheets in PDB entry 7XF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
372 381anti-parallel
Strand 3
A
389 395anti-parallel
Strand 4
A
407 411anti-parallel
Strand 5
A
338 339parallel
Strand 6
A
332 333anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
372 381anti-parallel
Strand 3
A
322 326anti-parallel
Strand 4
A
419 425anti-parallel
Strand 5
A
267 271anti-parallel
Strand 6
A
300 302parallel
Strand 7
A
282 286anti-parallel
Strand 8
A
442 444parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 236first strand
Strand 2
A
242 248anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il