Analysis of interatomic Contacts of Structural Units in PDB entry:
7XFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7XFD entry

There are 2 chains in PDB entry 7XFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 82ASN 252
B
 ASN 82ASN 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7XFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 105Right-handed alpha
Helix 2
AA2
A
112 117Right-handed alpha
Helix 3
AA3
A
140 153Right-handed alpha
Helix 4
AA4
A
193 201Right-handed alpha
Helix 5
AA5
A
225 232Right-handed alpha
Helix 6
AA6
B
100 105Right-handed alpha
Helix 7
AA7
B
112 117Right-handed alpha
Helix 8
AA8
B
140 153Right-handed alpha
Helix 9
AA9
B
193 201Right-handed alpha
Helix 10
AB1
B
225 232Right-handed alpha
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There are 6 sheets in PDB entry 7XFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
92 97anti-parallel
Strand 3
A
161 167anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
132 135anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
172 177anti-parallel
Strand 3
A
246 249parallel
Strand 4
A
213 217anti-parallel
Strand 5
A
220 224anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
92 97anti-parallel
Strand 3
B
161 167anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 128first strand
Strand 2
B
132 135anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 186first strand
Strand 2
B
172 177anti-parallel
Strand 3
B
246 249parallel
Strand 4
B
213 217anti-parallel
Strand 5
B
220 224anti-parallel
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