Analysis of interatomic Contacts of Structural Units in PDB entry:
7XJY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7XJY entry

There are 2 chains in PDB entry 7XJY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 28	LEU 874
B	SER 28	LEU 874

There are 65 helices in PDB entry 7XJY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	47	Right-handed alpha
Helix 2	AA2	A	60	64	Right-handed 310
Helix 3	AA3	A	88	91	Right-handed 310
Helix 4	AA4	A	116	128	Right-handed alpha
Helix 5	AA5	A	190	199	Right-handed alpha
Helix 6	AA6	A	202	205	Right-handed 310
Helix 7	AA7	A	214	231	Right-handed alpha
Helix 8	AA8	A	235	255	Right-handed alpha
Helix 9	AA9	A	257	278	Right-handed alpha
Helix 10	AB1	A	284	311	Right-handed alpha
Helix 11	AB2	A	354	376	Right-handed alpha
Helix 12	AB3	A	466	480	Right-handed alpha
Helix 13	AB4	A	538	540	Right-handed 310
Helix 14	AB5	A	541	549	Right-handed alpha
Helix 15	AB6	A	556	572	Right-handed alpha
Helix 16	AB7	A	580	591	Right-handed alpha
Helix 17	AB8	A	602	608	Right-handed 310
Helix 18	AB9	A	609	620	Right-handed alpha
Helix 19	AC1	A	647	673	Right-handed alpha
Helix 20	AC2	A	677	682	Right-handed alpha
Helix 21	AC3	A	683	687	Right-handed 310
Helix 22	AC4	A	697	706	Right-handed alpha
Helix 23	AC5	A	707	715	Right-handed alpha
Helix 24	AC6	A	718	720	Right-handed 310
Helix 25	AC7	A	721	730	Right-handed alpha
Helix 26	AC8	A	738	744	Right-handed alpha
Helix 27	AC9	A	745	748	Right-handed 310
Helix 28	AD1	A	749	760	Right-handed alpha
Helix 29	AD2	A	762	772	Right-handed alpha
Helix 30	AD3	A	785	807	Right-handed alpha
Helix 31	AD4	A	818	833	Right-handed alpha
Helix 32	AD5	A	838	850	Right-handed alpha
Helix 33	AD6	A	855	874	Right-handed alpha
Helix 34	AD7	B	31	47	Right-handed alpha
Helix 35	AD8	B	60	64	Right-handed 310
Helix 36	AD9	B	88	91	Right-handed 310
Helix 37	AE1	B	116	128	Right-handed alpha
Helix 38	AE2	B	190	199	Right-handed alpha
Helix 39	AE3	B	202	205	Right-handed 310
Helix 40	AE4	B	214	231	Right-handed alpha
Helix 41	AE5	B	235	255	Right-handed alpha
Helix 42	AE6	B	257	278	Right-handed alpha
Helix 43	AE7	B	284	311	Right-handed alpha
Helix 44	AE8	B	354	376	Right-handed alpha
Helix 45	AE9	B	466	480	Right-handed alpha
Helix 46	AF1	B	538	540	Right-handed 310
Helix 47	AF2	B	541	549	Right-handed alpha
Helix 48	AF3	B	556	572	Right-handed alpha
Helix 49	AF4	B	580	591	Right-handed alpha
Helix 50	AF5	B	602	608	Right-handed 310
Helix 51	AF6	B	609	620	Right-handed alpha
Helix 52	AF7	B	647	674	Right-handed alpha
Helix 53	AF8	B	679	687	Right-handed 310
Helix 54	AF9	B	697	706	Right-handed alpha
Helix 55	AG1	B	707	715	Right-handed alpha
Helix 56	AG2	B	718	720	Right-handed 310
Helix 57	AG3	B	721	730	Right-handed alpha
Helix 58	AG4	B	738	744	Right-handed alpha
Helix 59	AG5	B	745	748	Right-handed 310
Helix 60	AG6	B	749	760	Right-handed alpha
Helix 61	AG7	B	762	772	Right-handed alpha
Helix 62	AG8	B	785	807	Right-handed alpha
Helix 63	AG9	B	819	833	Right-handed alpha
Helix 64	AH1	B	838	850	Right-handed alpha
Helix 65	AH2	B	855	874	Right-handed alpha

There are 16 sheets in PDB entry 7XJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	77	86	parallel
Strand 3	A	102	111	anti-parallel
Strand 4	A	184	189	anti-parallel
Strand 5	A	163	173	anti-parallel
Strand 6	A	151	160	anti-parallel
Strand 7	A	137	141	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	77	86	parallel
Strand 3	A	102	111	anti-parallel
Strand 4	A	184	189	anti-parallel
Strand 5	A	163	173	anti-parallel
Strand 6	A	151	160	anti-parallel
Strand 7	A	144	146	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	209	first strand
Strand 2	A	212	213	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	388	first strand
Strand 2	A	391	399	anti-parallel
Strand 3	A	342	350	anti-parallel
Strand 4	A	498	505	anti-parallel
Strand 5	A	508	509	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	514	first strand
Strand 2	A	517	518	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	523	first strand
Strand 2	A	534	535	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	575	577	first strand
Strand 2	A	624	628	anti-parallel
Strand 3	A	634	643	anti-parallel
Strand 4	A	594	599	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	691	first strand
Strand 2	A	695	696	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	77	86	parallel
Strand 3	B	102	111	anti-parallel
Strand 4	B	184	189	anti-parallel
Strand 5	B	163	173	anti-parallel
Strand 6	B	151	160	anti-parallel
Strand 7	B	137	141	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	77	86	parallel
Strand 3	B	102	111	anti-parallel
Strand 4	B	184	189	anti-parallel
Strand 5	B	163	173	anti-parallel
Strand 6	B	151	160	anti-parallel
Strand 7	B	144	146	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	212	213	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	388	first strand
Strand 2	B	391	399	anti-parallel
Strand 3	B	342	350	anti-parallel
Strand 4	B	498	505	anti-parallel
Strand 5	B	508	509	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	514	first strand
Strand 2	B	517	518	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	522	524	first strand
Strand 2	B	533	535	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	575	577	first strand
Strand 2	B	624	628	anti-parallel
Strand 3	B	634	643	anti-parallel
Strand 4	B	594	599	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	691	first strand
Strand 2	B	695	696	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7XJY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7XJY