Analysis of interatomic Contacts of Structural Units in PDB entry:
7XMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7XMD entry

There are 4 chains in PDB entry 7XMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4LYS 660
B
 SER 23ALA 283
C
 GLY 22MET 204
D
 SER 14HIS 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 7XMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 38Right-handed alpha
Helix 2
AA2
A
41 47Right-handed alpha
Helix 3
AA3
A
53 87Right-handed alpha
Helix 4
AA4
A
95 114Right-handed alpha
Helix 5
AA5
A
114 131Right-handed alpha
Helix 6
AA6
A
138 160Right-handed alpha
Helix 7
AA7
A
173 178Right-handed alpha
Helix 8
AA8
A
185 215Right-handed alpha
Helix 9
AA9
A
226 259Right-handed alpha
Helix 10
AB1
A
272 284Right-handed alpha
Helix 11
AB2
A
284 306Right-handed alpha
Helix 12
AB3
A
312 327Right-handed alpha
Helix 13
AB4
A
328 329Right-handed 310
Helix 14
AB5
A
330 339Right-handed 310
Helix 15
AB6
A
341 355Right-handed alpha
Helix 16
AB7
A
355 370Right-handed alpha
Helix 17
AB8
A
378 403Right-handed alpha
Helix 18
AB9
A
403 411Right-handed alpha
Helix 19
AC1
A
413 426Right-handed alpha
Helix 20
AC2
A
427 440Right-handed alpha
Helix 21
AC3
A
440 445Right-handed alpha
Helix 22
AC4
A
449 478Right-handed alpha
Helix 23
AC5
A
488 490Right-handed 310
Helix 24
AC6
A
491 522Right-handed alpha
Helix 25
AC7
A
538 543Right-handed 310
Helix 26
AC8
A
562 571Right-handed alpha
Helix 27
AC9
A
590 608Right-handed alpha
Helix 28
AD1
A
610 631Right-handed alpha
Helix 29
AD2
A
639 656Right-handed alpha
Helix 30
AD3
B
34 70Right-handed alpha
Helix 31
AD4
B
85 114Right-handed alpha
Helix 32
AD5
B
212 218Right-handed 310
Helix 33
AD6
B
227 240Right-handed alpha
Helix 34
AD7
B
247 255Right-handed alpha
Helix 35
AD8
B
272 283Right-handed alpha
Helix 36
AD9
C
23 51Right-handed alpha
Helix 37
AE1
C
65 92Right-handed alpha
Helix 38
AE2
C
94 126Right-handed alpha
Helix 39
AE3
C
133 168Right-handed alpha
Helix 40
AE4
C
170 198Right-handed alpha
Helix 41
AE5
C
200 204Right-handed 310
Helix 42
AE6
D
15 39Right-handed alpha
Helix 43
AE7
D
44 64Right-handed alpha
Helix 44
AE8
D
71 75Right-handed 310
Helix 45
AE9
D
77 106Right-handed alpha
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There are 3 sheets in PDB entry 7XMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 586first strand
Strand 2
A
635 638anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 196first strand
Strand 2
B
160 167anti-parallel
Strand 3
B
127 133parallel
Strand 4
B
138 141anti-parallel
Strand 5
B
148 150anti-parallel
Strand 6
B
264 266anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
220 225parallel
Strand 3
B
201 207anti-parallel
Strand 4
B
172 175anti-parallel
Strand 5
B
184 185anti-parallel
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