Analysis of interatomic Contacts of Structural Units in PDB entry:
7XME

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7XME entry

There are 4 chains in PDB entry 7XME (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 21	LYS 182
B	SER 21	LYS 182
C	SER 21	MET 183
D	SER 21	MET 183

There are 16 helices in PDB entry 7XME. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	106	Right-handed alpha
Helix 2	AA2	A	107	113	Right-handed alpha
Helix 3	AA3	A	129	141	Right-handed alpha
Helix 4	AA4	A	142	148	Right-handed alpha
Helix 5	AA5	B	90	106	Right-handed alpha
Helix 6	AA6	B	107	113	Right-handed alpha
Helix 7	AA7	B	129	141	Right-handed alpha
Helix 8	AA8	B	142	150	Right-handed alpha
Helix 9	AA9	C	90	106	Right-handed alpha
Helix 10	AB1	C	107	113	Right-handed alpha
Helix 11	AB2	C	129	141	Right-handed alpha
Helix 12	AB3	C	142	148	Right-handed alpha
Helix 13	AB4	D	90	106	Right-handed alpha
Helix 14	AB5	D	107	113	Right-handed alpha
Helix 15	AB6	D	129	141	Right-handed alpha
Helix 16	AB7	D	142	148	Right-handed alpha

There are 16 sheets in PDB entry 7XME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	28	35	anti-parallel
Strand 3	A	61	66	anti-parallel
Strand 4	A	70	77	anti-parallel
Strand 5	A	80	88	anti-parallel
Strand 6	A	178	180	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	45	first strand
Strand 2	A	51	58	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	173	175	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	169	170	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	25	first strand
Strand 2	B	28	35	anti-parallel
Strand 3	B	61	66	anti-parallel
Strand 4	B	70	77	anti-parallel
Strand 5	B	80	88	anti-parallel
Strand 6	B	178	180	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	45	first strand
Strand 2	B	51	58	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	153	first strand
Strand 2	B	173	175	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	169	170	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	25	first strand
Strand 2	C	28	35	anti-parallel
Strand 3	C	61	66	anti-parallel
Strand 4	C	70	77	anti-parallel
Strand 5	C	80	88	anti-parallel
Strand 6	C	178	180	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	45	first strand
Strand 2	C	51	58	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	153	first strand
Strand 2	C	173	175	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	169	170	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	25	first strand
Strand 2	D	28	35	anti-parallel
Strand 3	D	61	66	anti-parallel
Strand 4	D	70	77	anti-parallel
Strand 5	D	80	88	anti-parallel
Strand 6	D	178	180	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	45	first strand
Strand 2	D	51	58	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	153	first strand
Strand 2	D	173	175	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	169	170	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7XME

Analysis of interatomic Contacts of Structural Units in PDB entry:
7XME