Analysis of interatomic Contacts of Structural Units in PDB entry:
7XMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7XMJ entry

There are 4 chains in PDB entry 7XMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 7LEU 308
B
 ASN 5GLU 310
C
 ASN 5GLU 310
D
 GLN 8ASN 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 7XMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 33Right-handed alpha
Helix 2
AA2
A
94 97Right-handed 310
Helix 3
AA3
A
98 104Right-handed alpha
Helix 4
AA4
A
138 145Right-handed 310
Helix 5
AA5
A
146 164Right-handed alpha
Helix 6
AA6
A
179 192Right-handed alpha
Helix 7
AA7
A
207 214Right-handed alpha
Helix 8
AA8
A
222 232Right-handed alpha
Helix 9
AA9
A
237 246Right-handed alpha
Helix 10
AB1
A
249 254Right-handed alpha
Helix 11
AB2
A
255 257Right-handed 310
Helix 12
AB3
A
273 282Right-handed alpha
Helix 13
AB4
A
303 308Right-handed alpha
Helix 14
AB5
B
19 33Right-handed alpha
Helix 15
AB6
B
94 97Right-handed 310
Helix 16
AB7
B
98 104Right-handed alpha
Helix 17
AB8
B
138 145Right-handed 310
Helix 18
AB9
B
146 164Right-handed alpha
Helix 19
AC1
B
179 192Right-handed alpha
Helix 20
AC2
B
207 214Right-handed alpha
Helix 21
AC3
B
222 232Right-handed alpha
Helix 22
AC4
B
237 246Right-handed alpha
Helix 23
AC5
B
249 254Right-handed alpha
Helix 24
AC6
B
255 257Right-handed 310
Helix 25
AC7
B
273 282Right-handed alpha
Helix 26
AC8
B
303 310Right-handed alpha
Helix 27
AC9
C
6 10Right-handed alpha
Helix 28
AD1
C
19 33Right-handed alpha
Helix 29
AD2
C
94 97Right-handed 310
Helix 30
AD3
C
98 104Right-handed alpha
Helix 31
AD4
C
138 145Right-handed 310
Helix 32
AD5
C
146 164Right-handed alpha
Helix 33
AD6
C
179 192Right-handed alpha
Helix 34
AD7
C
207 214Right-handed alpha
Helix 35
AD8
C
222 232Right-handed alpha
Helix 36
AD9
C
237 246Right-handed alpha
Helix 37
AE1
C
249 254Right-handed alpha
Helix 38
AE2
C
255 257Right-handed 310
Helix 39
AE3
C
273 282Right-handed alpha
Helix 40
AE4
C
303 310Right-handed alpha
Helix 41
AE5
D
19 33Right-handed alpha
Helix 42
AE6
D
94 97Right-handed 310
Helix 43
AE7
D
98 104Right-handed alpha
Helix 44
AE8
D
138 145Right-handed 310
Helix 45
AE9
D
146 164Right-handed alpha
Helix 46
AF1
D
179 192Right-handed alpha
Helix 47
AF2
D
207 214Right-handed alpha
Helix 48
AF3
D
222 232Right-handed alpha
Helix 49
AF4
D
237 246Right-handed alpha
Helix 50
AF5
D
249 254Right-handed alpha
Helix 51
AF6
D
255 257Right-handed 310
Helix 52
AF7
D
273 282Right-handed alpha
Helix 53
AF8
D
303 308Right-handed alpha
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There are 4 sheets in PDB entry 7XMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
50 58anti-parallel
Strand 3
A
64 72anti-parallel
Strand 4
A
107 111anti-parallel
Strand 5
A
79 85parallel
Strand 6
A
168 178parallel
Strand 7
A
197 201parallel
Strand 8
A
260 266parallel
Strand 9
A
288 293parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 42first strand
Strand 2
B
50 58anti-parallel
Strand 3
B
64 72anti-parallel
Strand 4
B
107 111anti-parallel
Strand 5
B
79 85parallel
Strand 6
B
168 178parallel
Strand 7
B
197 201parallel
Strand 8
B
260 266parallel
Strand 9
B
288 293parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 42first strand
Strand 2
C
50 58anti-parallel
Strand 3
C
64 72anti-parallel
Strand 4
C
107 111anti-parallel
Strand 5
C
79 85parallel
Strand 6
C
168 178parallel
Strand 7
C
197 201parallel
Strand 8
C
260 266parallel
Strand 9
C
288 293parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 43first strand
Strand 2
D
50 58anti-parallel
Strand 3
D
64 72anti-parallel
Strand 4
D
107 111anti-parallel
Strand 5
D
79 85parallel
Strand 6
D
168 178parallel
Strand 7
D
197 201parallel
Strand 8
D
260 266parallel
Strand 9
D
288 293parallel
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