Analysis of interatomic Contacts of Structural Units in PDB entry:
7XML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7XML entry

There are 4 chains in PDB entry 7XML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 428
C
 VAL 7VAL 73
B
 MET 1LEU 428
D
 VAL 7VAL 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7XML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 74Right-handed alpha
Helix 2
AA2
A
75 79Right-handed 310
Helix 3
AA3
A
86 99Right-handed alpha
Helix 4
AA4
A
107 126Right-handed alpha
Helix 5
AA5
A
129 134Right-handed alpha
Helix 6
AA6
A
153 156Right-handed 310
Helix 7
AA7
A
174 197Right-handed alpha
Helix 8
AA8
A
214 230Right-handed alpha
Helix 9
AA9
A
268 281Right-handed alpha
Helix 10
AB1
A
294 305Right-handed alpha
Helix 11
AB2
A
314 318Right-handed 310
Helix 12
AB3
A
325 331Right-handed alpha
Helix 13
AB4
A
341 343Right-handed 310
Helix 14
AB5
A
346 359Right-handed alpha
Helix 15
AB6
A
376 384Right-handed alpha
Helix 16
AB7
A
395 411Right-handed alpha
Helix 17
AB8
A
421 425Right-handed 310
Helix 18
AB9
C
51 63Right-handed alpha
Helix 19
AC1
B
64 74Right-handed alpha
Helix 20
AC2
B
75 79Right-handed 310
Helix 21
AC3
B
86 99Right-handed alpha
Helix 22
AC4
B
107 126Right-handed alpha
Helix 23
AC5
B
129 134Right-handed alpha
Helix 24
AC6
B
153 156Right-handed 310
Helix 25
AC7
B
174 197Right-handed alpha
Helix 26
AC8
B
214 230Right-handed alpha
Helix 27
AC9
B
268 281Right-handed alpha
Helix 28
AD1
B
294 305Right-handed alpha
Helix 29
AD2
B
314 318Right-handed 310
Helix 30
AD3
B
325 331Right-handed alpha
Helix 31
AD4
B
341 343Right-handed 310
Helix 32
AD5
B
346 359Right-handed alpha
Helix 33
AD6
B
376 384Right-handed alpha
Helix 34
AD7
B
395 411Right-handed alpha
Helix 35
AD8
B
421 425Right-handed 310
Helix 36
AD9
D
51 63Right-handed alpha
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There are 10 sheets in PDB entry 7XML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 13first strand
Strand 2
A
19 27anti-parallel
Strand 3
A
32 37anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
418 419parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 151first strand
Strand 2
A
164 169anti-parallel
Strand 3
A
237 242anti-parallel
Strand 4
A
283 287parallel
Strand 5
A
310 313parallel
Strand 6
A
335 339parallel
Strand 7
A
363 366parallel
Strand 8
A
388 390parallel
Strand 9
A
144 151parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
255 258anti-parallel
Strand 3
A
263 265anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 20first strand
Strand 2
C
31 35anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 13first strand
Strand 2
B
19 27anti-parallel
Strand 3
B
32 37anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
418 419parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 151first strand
Strand 2
B
164 169anti-parallel
Strand 3
B
237 242anti-parallel
Strand 4
B
283 287parallel
Strand 5
B
310 313parallel
Strand 6
B
335 339parallel
Strand 7
B
363 366parallel
Strand 8
B
388 390parallel
Strand 9
B
144 151parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 250first strand
Strand 2
B
255 258anti-parallel
Strand 3
B
263 265anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 20first strand
Strand 2
D
31 35anti-parallel
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