Analysis of interatomic Contacts of Structural Units in PDB entry:
7XMT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7XMT entry

There are 5 chains in PDB entry 7XMT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	GLY 46	ARG 320
A	LEU 5	PHE 354
S	ASP 1	LEU 247
C	LYS 29	GLU 63
B	LEU 30	ASN 340

There are 24 helices in PDB entry 7XMT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	46	74	Right-handed alpha
Helix 2	AA2	R	80	97	Right-handed alpha
Helix 3	AA3	R	99	109	Right-handed alpha
Helix 4	AA4	R	118	150	Right-handed alpha
Helix 5	AA5	R	150	155	Right-handed alpha
Helix 6	AA6	R	159	179	Right-handed alpha
Helix 7	AA7	R	179	184	Right-handed alpha
Helix 8	AA8	R	204	218	Right-handed alpha
Helix 9	AA9	R	220	245	Right-handed alpha
Helix 10	AB1	R	251	284	Right-handed alpha
Helix 11	AB2	R	293	307	Right-handed alpha
Helix 12	AB3	R	307	312	Right-handed alpha
Helix 13	AB4	R	315	320	Right-handed alpha
Helix 14	AB5	A	8	33	Right-handed alpha
Helix 15	AB6	A	207	211	Right-handed 310
Helix 16	AB7	A	228	230	Right-handed 310
Helix 17	AB8	A	241	255	Right-handed alpha
Helix 18	AB9	A	270	279	Right-handed alpha
Helix 19	AC1	A	295	308	Right-handed alpha
Helix 20	AC2	A	331	352	Right-handed alpha
Helix 21	AC3	S	28	32	Right-handed 310
Helix 22	AC4	S	87	91	Right-handed 310
Helix 23	AC5	C	30	35	Right-handed alpha
Helix 24	AC6	C	37	42	Right-handed alpha

There are 14 sheets in PDB entry 7XMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	38	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	324	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	6	first strand
Strand 2	S	20	25	anti-parallel
Strand 3	S	78	83	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	58	60	first strand
Strand 2	S	46	51	anti-parallel
Strand 3	S	34	38	anti-parallel
Strand 4	S	95	97	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	140	141	first strand
Strand 2	S	155	161	anti-parallel
Strand 3	S	211	216	anti-parallel
Strand 4	S	203	208	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	148	first strand
Strand 2	S	244	246	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	186	187	first strand
Strand 2	S	175	179	anti-parallel
Strand 3	S	226	230	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	189	190	first strand
Strand 2	S	194	195	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	123	125	anti-parallel
Strand 4	B	134	137	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	157	160	anti-parallel
Strand 3	B	166	169	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	202	first strand
Strand 2	B	208	212	anti-parallel
Strand 3	B	221	222	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	262	263	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7XMT

Analysis of interatomic Contacts of Structural Units in PDB entry:
7XMT