Analysis of interatomic Contacts of Structural Units in PDB entry:
7XPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7XPM entry

There is 1 chain in PDB entry 7XPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7XPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
33 44Right-handed alpha
Helix 3
AA3
A
64 72Right-handed alpha
Helix 4
AA4
A
92 96Right-handed alpha
Helix 5
AA5
A
96 115Right-handed alpha
Helix 6
AA6
A
127 131Right-handed 310
Helix 7
AA7
A
133 137Right-handed 310
Helix 8
AA8
A
162 182Right-handed alpha
Helix 9
AA9
A
216 224Right-handed alpha
Helix 10
AB1
A
244 257Right-handed alpha
Helix 11
AB2
A
258 261Right-handed 310
Helix 12
AB3
A
273 285Right-handed alpha
Helix 13
AB4
A
286 289Right-handed 310
Helix 14
AB5
A
313 321Right-handed alpha
Helix 15
AB6
A
326 342Right-handed alpha
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There are 3 sheets in PDB entry 7XPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
26 31parallel
Strand 3
A
2 5parallel
Strand 4
A
75 80parallel
Strand 5
A
121 125parallel
Strand 6
A
189 195parallel
Strand 7
A
264 267parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
310 311parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
239 243parallel
Strand 3
A
271 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il