Analysis of interatomic Contacts of Structural Units in PDB entry:
7XPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7XPP entry

There are 2 chains in PDB entry 7XPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ARG 7TYR 347
A
 ARG 7TYR 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 7XPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
16 29Right-handed alpha
Helix 2
AA2
B
44 55Right-handed alpha
Helix 3
AA3
B
56 61Right-handed 310
Helix 4
AA4
B
70 79Right-handed alpha
Helix 5
AA5
B
94 101Right-handed alpha
Helix 6
AA6
B
101 123Right-handed alpha
Helix 7
AA7
B
135 138Right-handed 310
Helix 8
AA8
B
155 175Right-handed alpha
Helix 9
AA9
B
208 217Right-handed alpha
Helix 10
AB1
B
244 260Right-handed alpha
Helix 11
AB2
B
261 265Right-handed 310
Helix 12
AB3
B
280 292Right-handed alpha
Helix 13
AB4
B
314 321Right-handed alpha
Helix 14
AB5
B
328 343Right-handed alpha
Helix 15
AB6
A
17 28Right-handed alpha
Helix 16
AB7
A
44 55Right-handed alpha
Helix 17
AB8
A
56 59Right-handed 310
Helix 18
AB9
A
70 81Right-handed alpha
Helix 19
AC1
A
94 101Right-handed alpha
Helix 20
AC2
A
101 123Right-handed alpha
Helix 21
AC3
A
133 138Right-handed 310
Helix 22
AC4
A
155 175Right-handed alpha
Helix 23
AC5
A
209 217Right-handed alpha
Helix 24
AC6
A
244 261Right-handed alpha
Helix 25
AC7
A
280 292Right-handed alpha
Helix 26
AC8
A
314 321Right-handed alpha
Helix 27
AC9
A
328 343Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 7XPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
32 36parallel
Strand 3
B
8 12parallel
Strand 4
B
85 88parallel
Strand 5
B
127 133parallel
Strand 6
B
179 185parallel
Strand 7
B
268 271parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
242 243parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 226first strand
Strand 2
B
297 300parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
278 279anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
32 36parallel
Strand 3
A
8 12parallel
Strand 4
A
85 88parallel
Strand 5
A
127 131parallel
Strand 6
A
179 184parallel
Strand 7
A
267 271parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
311 312parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
242 243parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 226first strand
Strand 2
A
297 300parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
278 279anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il