Analysis of interatomic Contacts of Structural Units in PDB entry:
7XRQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7XRQ entry

There are 2 chains in PDB entry 7XRQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5ALA 319
B
 ASN 5ALA 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 7XRQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed 310
Helix 2
AA2
A
28 33Right-handed alpha
Helix 3
AA3
A
45 47Right-handed 310
Helix 4
AA4
A
52 66Right-handed alpha
Helix 5
AA5
A
82 96Right-handed alpha
Helix 6
AA6
A
108 118Right-handed alpha
Helix 7
AA7
A
136 148Right-handed alpha
Helix 8
AA8
A
160 169Right-handed alpha
Helix 9
AA9
A
169 179Right-handed alpha
Helix 10
AB1
A
192 203Right-handed alpha
Helix 11
AB2
A
249 253Right-handed 310
Helix 12
AB3
A
260 275Right-handed alpha
Helix 13
AB4
A
281 295Right-handed alpha
Helix 14
AB5
A
310 319Right-handed 310
Helix 15
AB6
B
13 18Right-handed 310
Helix 16
AB7
B
28 33Right-handed alpha
Helix 17
AB8
B
45 47Right-handed 310
Helix 18
AB9
B
52 66Right-handed alpha
Helix 19
AC1
B
82 96Right-handed alpha
Helix 20
AC2
B
108 118Right-handed alpha
Helix 21
AC3
B
136 148Right-handed alpha
Helix 22
AC4
B
160 168Right-handed alpha
Helix 23
AC5
B
169 178Right-handed alpha
Helix 24
AC6
B
192 206Right-handed alpha
Helix 25
AC7
B
260 275Right-handed alpha
Helix 26
AC8
B
280 294Right-handed alpha
Helix 27
AC9
B
295 297Right-handed 310
Helix 28
AD1
B
310 319Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 7XRQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
38 43anti-parallel
Strand 3
A
302 307parallel
Strand 4
A
184 188parallel
Strand 5
A
210 215parallel
Strand 6
A
255 258parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
98 104parallel
Strand 3
A
75 79parallel
Strand 4
A
151 152parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 25first strand
Strand 2
B
38 43anti-parallel
Strand 3
B
302 307parallel
Strand 4
B
184 188parallel
Strand 5
B
210 215parallel
Strand 6
B
255 258parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 125first strand
Strand 2
B
98 104parallel
Strand 3
B
75 79parallel
Strand 4
B
151 152parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il