Analysis of interatomic Contacts of Structural Units in PDB entry:
7XVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7XVF entry

There are 3 chains in PDB entry 7XVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8GLU 1768
B
 GLY 20ALA 192
C
 SER 29MET 148
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 7XVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 34Right-handed alpha
Helix 2
AA2
A
60 64Right-handed 310
Helix 3
AA3
A
79 85Right-handed alpha
Helix 4
AA4
A
104 108Right-handed 310
Helix 5
AA5
A
113 125Right-handed alpha
Helix 6
AA6
A
125 144Right-handed alpha
Helix 7
AA7
A
150 175Right-handed alpha
Helix 8
AA8
A
182 185Right-handed 310
Helix 9
AA9
A
186 205Right-handed alpha
Helix 10
AB1
A
210 219Right-handed alpha
Helix 11
AB2
A
219 226Right-handed alpha
Helix 12
AB3
A
230 245Right-handed alpha
Helix 13
AB4
A
245 268Right-handed alpha
Helix 14
AB5
A
269 271Right-handed 310
Helix 15
AB6
A
285 293Right-handed alpha
Helix 16
AB7
A
295 303Right-handed alpha
Helix 17
AB8
A
337 341Right-handed 310
Helix 18
AB9
A
346 360Right-handed alpha
Helix 19
AC1
A
362 375Right-handed alpha
Helix 20
AC2
A
378 389Right-handed alpha
Helix 21
AC3
A
389 417Right-handed alpha
Helix 22
AC4
A
727 741Right-handed alpha
Helix 23
AC5
A
742 762Right-handed alpha
Helix 24
AC6
A
769 798Right-handed alpha
Helix 25
AC7
A
799 806Right-handed alpha
Helix 26
AC8
A
808 824Right-handed alpha
Helix 27
AC9
A
831 835Right-handed 310
Helix 28
AD1
A
837 848Right-handed 310
Helix 29
AD2
A
849 895Right-handed alpha
Helix 30
AD3
A
895 900Right-handed alpha
Helix 31
AD4
A
912 926Right-handed alpha
Helix 32
AD5
A
928 940Right-handed alpha
Helix 33
AD6
A
940 956Right-handed alpha
Helix 34
AD7
A
958 972Right-handed alpha
Helix 35
AD8
A
986 1014Right-handed alpha
Helix 36
AD9
A
1176 1191Right-handed alpha
Helix 37
AE1
A
1191 1212Right-handed alpha
Helix 38
AE2
A
1219 1248Right-handed alpha
Helix 39
AE3
A
1249 1254Right-handed alpha
Helix 40
AE4
A
1256 1279Right-handed alpha
Helix 41
AE5
A
1283 1292Right-handed alpha
Helix 42
AE6
A
1293 1296Right-handed 310
Helix 43
AE7
A
1297 1304Right-handed alpha
Helix 44
AE8
A
1304 1316Right-handed alpha
Helix 45
AE9
A
1317 1344Right-handed alpha
Helix 46
AF1
A
1366 1377Right-handed alpha
Helix 47
AF2
A
1391 1404Right-handed alpha
Helix 48
AF3
A
1407 1416Right-handed alpha
Helix 49
AF4
A
1430 1432Right-handed 310
Helix 50
AF5
A
1433 1447Right-handed alpha
Helix 51
AF6
A
1447 1468Right-handed alpha
Helix 52
AF7
A
1475 1490Right-handed alpha
Helix 53
AF8
A
1502 1514Right-handed alpha
Helix 54
AF9
A
1514 1534Right-handed alpha
Helix 55
AG1
A
1540 1570Right-handed alpha
Helix 56
AG2
A
1571 1575Right-handed 310
Helix 57
AG3
A
1576 1602Right-handed alpha
Helix 58
AG4
A
1605 1613Right-handed alpha
Helix 59
AG5
A
1616 1622Right-handed alpha
Helix 60
AG6
A
1622 1627Right-handed alpha
Helix 61
AG7
A
1627 1667Right-handed alpha
Helix 62
AG8
A
1683 1696Right-handed alpha
Helix 63
AG9
A
1699 1709Right-handed alpha
Helix 64
AH1
A
1732 1750Right-handed alpha
Helix 65
AH2
A
1750 1768Right-handed alpha
Helix 66
AH3
B
112 115Right-handed 310
Helix 67
AH4
B
153 192Right-handed alpha
Helix 68
AH5
C
104 108Right-handed 310
Helix 69
AH6
C
118 122Right-handed 310
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There are 10 sheets in PDB entry 7XVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
97 101anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 277first strand
Strand 2
A
328 332anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1348 1352first strand
Strand 2
A
1380 1384anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
133 147parallel
Strand 3
B
117 128anti-parallel
Strand 4
B
50 61anti-parallel
Strand 5
B
68 74anti-parallel
Strand 6
B
77 80anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
106 108anti-parallel
Strand 3
B
90 92anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 33first strand
Strand 2
C
51 52anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 40first strand
Strand 2
C
140 146parallel
Strand 3
C
123 131anti-parallel
Strand 4
C
64 70anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 40first strand
Strand 2
C
140 146parallel
Strand 3
C
123 131anti-parallel
Strand 4
C
134 137anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 48first strand
Strand 2
C
112 114anti-parallel
Strand 3
C
99 101anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 83first strand
Strand 2
C
87 89anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il