Analysis of interatomic Contacts of Structural Units in PDB entry:
7XVJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7XVJ entry

There are 4 chains in PDB entry 7XVJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 37	GLU 440
B	MET 37	GLU 440
C	MET 37	GLU 440
D	MET 37	LYS 73

There are 73 helices in PDB entry 7XVJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	45	Right-handed alpha
Helix 2	AA2	A	51	72	Right-handed alpha
Helix 3	AA3	A	75	90	Right-handed alpha
Helix 4	AA4	A	91	94	Right-handed 310
Helix 5	AA5	A	108	112	Right-handed 310
Helix 6	AA6	A	136	141	Right-handed 310
Helix 7	AA7	A	149	162	Right-handed alpha
Helix 8	AA8	A	167	178	Right-handed alpha
Helix 9	AA9	A	180	186	Right-handed alpha
Helix 10	AB1	A	188	200	Right-handed alpha
Helix 11	AB2	A	224	232	Right-handed alpha
Helix 12	AB3	A	234	247	Right-handed alpha
Helix 13	AB4	A	252	267	Right-handed alpha
Helix 14	AB5	A	279	283	Right-handed 310
Helix 15	AB6	A	295	304	Right-handed alpha
Helix 16	AB7	A	311	329	Right-handed alpha
Helix 17	AB8	A	336	343	Right-handed alpha
Helix 18	AB9	A	373	388	Right-handed alpha
Helix 19	AC1	A	390	405	Right-handed alpha
Helix 20	AC2	B	38	45	Right-handed alpha
Helix 21	AC3	B	51	72	Right-handed alpha
Helix 22	AC4	B	75	90	Right-handed alpha
Helix 23	AC5	B	91	94	Right-handed 310
Helix 24	AC6	B	136	141	Right-handed 310
Helix 25	AC7	B	149	162	Right-handed alpha
Helix 26	AC8	B	167	178	Right-handed alpha
Helix 27	AC9	B	180	186	Right-handed alpha
Helix 28	AD1	B	188	200	Right-handed alpha
Helix 29	AD2	B	224	232	Right-handed alpha
Helix 30	AD3	B	234	247	Right-handed alpha
Helix 31	AD4	B	252	267	Right-handed alpha
Helix 32	AD5	B	279	283	Right-handed 310
Helix 33	AD6	B	295	304	Right-handed alpha
Helix 34	AD7	B	311	329	Right-handed alpha
Helix 35	AD8	B	339	343	Right-handed alpha
Helix 36	AD9	B	373	388	Right-handed alpha
Helix 37	AE1	B	390	405	Right-handed alpha
Helix 38	AE2	C	38	45	Right-handed alpha
Helix 39	AE3	C	51	72	Right-handed alpha
Helix 40	AE4	C	75	90	Right-handed alpha
Helix 41	AE5	C	91	94	Right-handed 310
Helix 42	AE6	C	108	112	Right-handed 310
Helix 43	AE7	C	136	141	Right-handed 310
Helix 44	AE8	C	148	162	Right-handed alpha
Helix 45	AE9	C	167	178	Right-handed alpha
Helix 46	AF1	C	180	186	Right-handed alpha
Helix 47	AF2	C	188	200	Right-handed alpha
Helix 48	AF3	C	224	232	Right-handed alpha
Helix 49	AF4	C	234	247	Right-handed alpha
Helix 50	AF5	C	252	267	Right-handed alpha
Helix 51	AF6	C	279	283	Right-handed 310
Helix 52	AF7	C	295	304	Right-handed alpha
Helix 53	AF8	C	311	329	Right-handed alpha
Helix 54	AF9	C	336	343	Right-handed alpha
Helix 55	AG1	C	373	388	Right-handed alpha
Helix 56	AG2	C	390	405	Right-handed alpha
Helix 57	AG3	D	38	45	Right-handed alpha
Helix 58	AG4	D	51	72	Right-handed alpha
Helix 59	AG5	D	75	90	Right-handed alpha
Helix 60	AG6	D	91	94	Right-handed 310
Helix 61	AG7	D	136	141	Right-handed alpha
Helix 62	AG8	D	149	162	Right-handed alpha
Helix 63	AG9	D	167	178	Right-handed alpha
Helix 64	AH1	D	180	186	Right-handed alpha
Helix 65	AH2	D	196	200	Right-handed alpha
Helix 66	AH3	D	224	232	Right-handed alpha
Helix 67	AH4	D	234	247	Right-handed alpha
Helix 68	AH5	D	252	267	Right-handed alpha
Helix 69	AH6	D	279	283	Right-handed 310
Helix 70	AH7	D	295	304	Right-handed alpha
Helix 71	AH8	D	311	329	Right-handed alpha
Helix 72	AH9	D	373	388	Right-handed alpha
Helix 73	AI1	D	390	400	Right-handed alpha

There are 4 sheets in PDB entry 7XVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	121	first strand
Strand 2	A	126	132	anti-parallel
Strand 3	A	205	212	anti-parallel
Strand 4	A	215	222	anti-parallel
Strand 5	A	272	276	anti-parallel
Strand 6	A	285	291	anti-parallel
Strand 7	A	348	354	anti-parallel
Strand 8	A	362	368	anti-parallel
Strand 9	A	417	425	anti-parallel
Strand 10	A	429	436	anti-parallel
Strand 11	A	115	121	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	120	first strand
Strand 2	B	127	132	anti-parallel
Strand 3	B	205	210	anti-parallel
Strand 4	B	217	222	anti-parallel
Strand 5	B	272	276	anti-parallel
Strand 6	B	285	291	anti-parallel
Strand 7	B	348	354	anti-parallel
Strand 8	B	362	368	anti-parallel
Strand 9	B	417	425	anti-parallel
Strand 10	B	429	436	anti-parallel
Strand 11	B	115	120	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	121	first strand
Strand 2	C	126	132	anti-parallel
Strand 3	C	205	210	anti-parallel
Strand 4	C	217	222	anti-parallel
Strand 5	C	272	276	anti-parallel
Strand 6	C	285	291	anti-parallel
Strand 7	C	348	354	anti-parallel
Strand 8	C	362	368	anti-parallel
Strand 9	C	417	425	anti-parallel
Strand 10	C	429	436	anti-parallel
Strand 11	C	115	121	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	121	first strand
Strand 2	D	127	132	anti-parallel
Strand 3	D	205	211	anti-parallel
Strand 4	D	217	222	anti-parallel
Strand 5	D	272	276	anti-parallel
Strand 6	D	285	291	anti-parallel
Strand 7	D	348	354	anti-parallel
Strand 8	D	362	368	anti-parallel
Strand 9	D	416	425	anti-parallel
Strand 10	D	429	437	anti-parallel
Strand 11	D	115	121	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7XVJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7XVJ