Analysis of interatomic Contacts of Structural Units in PDB entry:
7XVV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7XVV entry

There are 2 chains in PDB entry 7XVV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 84	VAL 472
B	GLU 84	VAL 472

There are 8 helices in PDB entry 7XVV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	109	Right-handed 310
Helix 2	AA2	A	147	153	Right-handed 310
Helix 3	AA3	A	171	175	Right-handed 310
Helix 4	AA4	A	467	471	Right-handed 310
Helix 5	AA5	B	104	109	Right-handed 310
Helix 6	AA6	B	147	151	Right-handed 310
Helix 7	AA7	B	171	175	Right-handed 310
Helix 8	AA8	B	467	471	Right-handed 310

There are 10 sheets in PDB entry 7XVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	103	first strand
Strand 2	A	444	453	anti-parallel
Strand 3	A	427	437	anti-parallel
Strand 4	A	415	420	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	127	first strand
Strand 2	A	132	137	anti-parallel
Strand 3	A	160	165	anti-parallel
Strand 4	A	176	180	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	188	first strand
Strand 2	A	193	199	anti-parallel
Strand 3	A	206	211	anti-parallel
Strand 4	A	214	220	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	257	262	anti-parallel
Strand 4	A	265	274	anti-parallel
Strand 5	A	316	321	parallel
Strand 6	A	306	311	anti-parallel
Strand 7	A	291	297	anti-parallel
Strand 8	A	280	286	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	361	first strand
Strand 2	A	366	373	anti-parallel
Strand 3	A	381	388	anti-parallel
Strand 4	A	400	411	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	103	first strand
Strand 2	B	444	453	anti-parallel
Strand 3	B	427	437	anti-parallel
Strand 4	B	415	420	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	127	first strand
Strand 2	B	132	137	anti-parallel
Strand 3	B	160	165	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	188	first strand
Strand 2	B	193	199	anti-parallel
Strand 3	B	206	211	anti-parallel
Strand 4	B	214	220	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	257	262	anti-parallel
Strand 4	B	265	274	anti-parallel
Strand 5	B	316	321	parallel
Strand 6	B	306	311	anti-parallel
Strand 7	B	291	297	anti-parallel
Strand 8	B	280	286	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	361	first strand
Strand 2	B	366	373	anti-parallel
Strand 3	B	381	388	anti-parallel
Strand 4	B	400	411	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7XVV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7XVV