Analysis of interatomic Contacts of Structural Units in PDB entry:
7XXJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7XXJ entry

There are 4 chains in PDB entry 7XXJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 6	HIS 278
B	SER 10	THR 259
C	GLY 1	LEU 238
D	THR 28	LEU 68

There are 16 helices in PDB entry 7XXJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	31	Right-handed 310
Helix 2	AA2	A	37	42	Right-handed alpha
Helix 3	AA3	A	57	62	Right-handed alpha
Helix 4	AA4	A	91	94	Right-handed 310
Helix 5	AA5	A	95	103	Right-handed alpha
Helix 6	AA6	A	154	158	Right-handed 310
Helix 7	AA7	B	35	37	Right-handed 310
Helix 8	AA8	B	83	87	Right-handed 310
Helix 9	AA9	B	89	98	Right-handed alpha
Helix 10	AB1	B	142	147	Right-handed alpha
Helix 11	AB2	B	177	184	Right-handed 310
Helix 12	AB3	C	43	49	Right-handed alpha
Helix 13	AB4	C	64	68	Right-handed 310
Helix 14	AB5	C	99	104	Right-handed alpha
Helix 15	AB6	C	145	152	Right-handed alpha
Helix 16	AB7	D	49	53	Right-handed 310

There are 10 sheets in PDB entry 7XXJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	C	164	168	anti-parallel
Strand 3	C	115	122	anti-parallel
Strand 4	C	209	217	anti-parallel
Strand 5	C	70	72	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	75	first strand
Strand 2	A	227	238	anti-parallel
Strand 3	A	111	119	anti-parallel
Strand 4	A	174	178	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	89	first strand
Strand 2	A	213	218	anti-parallel
Strand 3	A	136	142	anti-parallel
Strand 4	A	167	168	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	187	188	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	B	23	25	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	196	201	parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	239	254	anti-parallel
Strand 5	B	64	65	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	196	201	parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	239	254	anti-parallel
Strand 5	B	69	70	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	78	82	anti-parallel
Strand 3	B	218	229	anti-parallel
Strand 4	B	119	128	anti-parallel
Strand 5	B	186	190	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	87	first strand
Strand 2	C	190	195	anti-parallel
Strand 3	C	130	136	anti-parallel
Strand 4	C	153	158	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	179	first strand
Strand 2	C	110	112	anti-parallel
Strand 3	C	222	223	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7XXJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7XXJ