Analysis of interatomic Contacts of Structural Units in PDB entry:
7XYF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7XYF entry

There are 11 chains in PDB entry 7XYF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ALA 14	LYS 119
G	ALA 14	LYS 118
D	ARG 28	LYS 122
H	LYS 29	SER 121
J	A 1	A 146
I	T 1	T 146
K	ILE 232	ALA 903
A	PRO 38	ALA 135
E	PRO 38	ALA 135
B	LEU 22	GLY 102
F	ARG 17	GLY 102

There are 68 helices in PDB entry 7XYF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	16	22	Right-handed alpha
Helix 2	AA2	C	26	37	Right-handed alpha
Helix 3	AA3	C	45	73	Right-handed alpha
Helix 4	AA4	C	79	90	Right-handed alpha
Helix 5	AA5	C	90	97	Right-handed alpha
Helix 6	AA6	C	112	116	Right-handed 310
Helix 7	AA7	G	16	22	Right-handed alpha
Helix 8	AA8	G	26	37	Right-handed alpha
Helix 9	AA9	G	46	73	Right-handed alpha
Helix 10	AB1	G	79	90	Right-handed alpha
Helix 11	AB2	G	91	97	Right-handed alpha
Helix 12	AB3	G	112	116	Right-handed 310
Helix 13	AB4	D	34	46	Right-handed alpha
Helix 14	AB5	D	52	81	Right-handed alpha
Helix 15	AB6	D	87	99	Right-handed alpha
Helix 16	AB7	D	100	121	Right-handed alpha
Helix 17	AB8	H	34	44	Right-handed alpha
Helix 18	AB9	H	52	82	Right-handed alpha
Helix 19	AC1	H	87	99	Right-handed alpha
Helix 20	AC2	H	100	120	Right-handed alpha
Helix 21	AC3	K	233	248	Right-handed alpha
Helix 22	AC4	K	249	258	Right-handed alpha
Helix 23	AC5	K	260	271	Right-handed alpha
Helix 24	AC6	K	275	281	Right-handed alpha
Helix 25	AC7	K	301	340	Right-handed alpha
Helix 26	AC8	K	348	352	Right-handed 310
Helix 27	AC9	K	359	366	Right-handed alpha
Helix 28	AD1	K	388	404	Right-handed alpha
Helix 29	AD2	K	417	432	Right-handed alpha
Helix 30	AD3	K	443	446	Right-handed 310
Helix 31	AD4	K	447	458	Right-handed alpha
Helix 32	AD5	K	469	482	Right-handed alpha
Helix 33	AD6	K	493	500	Right-handed alpha
Helix 34	AD7	K	500	509	Right-handed alpha
Helix 35	AD8	K	521	525	Right-handed 310
Helix 36	AD9	K	528	537	Right-handed alpha
Helix 37	AE1	K	553	565	Right-handed alpha
Helix 38	AE2	K	576	581	Right-handed alpha
Helix 39	AE3	K	593	607	Right-handed alpha
Helix 40	AE4	K	636	644	Right-handed alpha
Helix 41	AE5	K	645	648	Right-handed 310
Helix 42	AE6	K	670	675	Right-handed alpha
Helix 43	AE7	K	678	689	Right-handed alpha
Helix 44	AE8	K	691	695	Right-handed 310
Helix 45	AE9	K	702	710	Right-handed alpha
Helix 46	AF1	K	724	729	Right-handed alpha
Helix 47	AF2	K	733	740	Right-handed alpha
Helix 48	AF3	K	760	765	Right-handed alpha
Helix 49	AF4	K	765	771	Right-handed alpha
Helix 50	AF5	K	786	794	Right-handed alpha
Helix 51	AF6	K	864	868	Right-handed 310
Helix 52	AF7	K	889	894	Right-handed alpha
Helix 53	AF8	A	44	57	Right-handed alpha
Helix 54	AF9	A	63	79	Right-handed alpha
Helix 55	AG1	A	87	114	Right-handed alpha
Helix 56	AG2	A	120	132	Right-handed alpha
Helix 57	AG3	E	44	57	Right-handed alpha
Helix 58	AG4	E	63	79	Right-handed alpha
Helix 59	AG5	E	87	114	Right-handed alpha
Helix 60	AG6	E	120	132	Right-handed alpha
Helix 61	AG7	B	25	29	Right-handed 310
Helix 62	AG8	B	30	42	Right-handed alpha
Helix 63	AG9	B	50	76	Right-handed alpha
Helix 64	AH1	B	82	93	Right-handed alpha
Helix 65	AH2	F	23	29	Right-handed 310
Helix 66	AH3	F	30	41	Right-handed alpha
Helix 67	AH4	F	49	76	Right-handed alpha
Helix 68	AH5	F	83	94	Right-handed alpha

There are 9 sheets in PDB entry 7XYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	101	first strand
Strand 2	F	96	97	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	407	410	first strand
Strand 2	K	539	545	parallel
Strand 3	K	512	518	parallel
Strand 4	K	438	441	parallel
Strand 5	K	489	492	parallel
Strand 6	K	463	465	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	627	628	first strand
Strand 2	K	880	883	parallel
Strand 3	K	851	853	parallel
Strand 4	K	780	783	parallel
Strand 5	K	831	832	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7XYF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7XYF