Analysis of interatomic Contacts of Structural Units in PDB entry:
7XYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7XYR entry

There is 1 chain in PDB entry 7XYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 21ILE 587
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 7XYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 61Right-handed 310
Helix 2
AA2
A
99 103Right-handed 310
Helix 3
AA3
A
160 164Right-handed 310
Helix 4
AA4
A
211 213Right-handed 310
Helix 5
AA5
A
333 347Right-handed alpha
Helix 6
AA6
A
360 371Right-handed alpha
Helix 7
AA7
A
387 406Right-handed alpha
Helix 8
AA8
A
427 444Right-handed alpha
Helix 9
AA9
A
472 479Right-handed alpha
Helix 10
AB1
A
524 541Right-handed alpha
Helix 11
AB2
A
571 580Right-handed alpha
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There are 7 sheets in PDB entry 7XYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
192 197anti-parallel
Strand 3
A
106 111anti-parallel
Strand 4
A
137 140anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
41 47anti-parallel
Strand 3
A
89 97anti-parallel
Strand 4
A
150 158anti-parallel
Strand 5
A
117 122anti-parallel
Strand 6
A
125 131anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
187 188anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 210first strand
Strand 2
A
215 222anti-parallel
Strand 3
A
255 258anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 248first strand
Strand 2
A
230 237anti-parallel
Strand 3
A
273 280anti-parallel
Strand 4
A
286 294anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 302first strand
Strand 2
A
305 308anti-parallel
Strand 3
A
311 312anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 414first strand
Strand 2
A
373 376parallel
Strand 3
A
351 354parallel
Strand 4
A
315 320parallel
Strand 5
A
545 549parallel
Strand 6
A
494 500parallel
Strand 7
A
464 467parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il