Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y04 entry

There are 5 chains in PDB entry 7Y04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 10	ILE 690
B	GLU 10	ILE 690
C	MET 1	ASP 111
D	MET 1	ASP 111
E	PRO 269	LYS 277

There are 52 helices in PDB entry 7Y04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	31	Right-handed alpha
Helix 2	AA2	A	38	58	Right-handed alpha
Helix 3	AA3	A	63	68	Right-handed 310
Helix 4	AA4	A	94	102	Right-handed alpha
Helix 5	AA5	A	108	116	Right-handed alpha
Helix 6	AA6	A	132	138	Right-handed 310
Helix 7	AA7	A	189	193	Right-handed 310
Helix 8	AA8	A	194	207	Right-handed alpha
Helix 9	AA9	A	292	296	Right-handed 310
Helix 10	AB1	A	299	310	Right-handed alpha
Helix 11	AB2	A	366	370	Right-handed 310
Helix 12	AB3	A	371	375	Right-handed 310
Helix 13	AB4	A	400	421	Right-handed alpha
Helix 14	AB5	A	425	444	Right-handed alpha
Helix 15	AB6	A	469	476	Right-handed alpha
Helix 16	AB7	A	490	496	Right-handed alpha
Helix 17	AB8	A	498	501	Right-handed 310
Helix 18	AB9	A	502	507	Right-handed alpha
Helix 19	AC1	A	516	525	Right-handed alpha
Helix 20	AC2	A	546	560	Right-handed alpha
Helix 21	AC3	A	561	571	Right-handed alpha
Helix 22	AC4	A	599	607	Right-handed alpha
Helix 23	AC5	A	632	645	Right-handed alpha
Helix 24	AC6	A	648	664	Right-handed alpha
Helix 25	AC7	A	673	689	Right-handed alpha
Helix 26	AC8	B	20	31	Right-handed alpha
Helix 27	AC9	B	38	58	Right-handed alpha
Helix 28	AD1	B	61	68	Right-handed 310
Helix 29	AD2	B	94	102	Right-handed alpha
Helix 30	AD3	B	108	115	Right-handed alpha
Helix 31	AD4	B	132	139	Right-handed 310
Helix 32	AD5	B	189	193	Right-handed 310
Helix 33	AD6	B	194	206	Right-handed alpha
Helix 34	AD7	B	292	296	Right-handed 310
Helix 35	AD8	B	297	310	Right-handed alpha
Helix 36	AD9	B	371	375	Right-handed 310
Helix 37	AE1	B	399	401	Right-handed 310
Helix 38	AE2	B	402	421	Right-handed alpha
Helix 39	AE3	B	422	431	Right-handed alpha
Helix 40	AE4	B	433	444	Right-handed alpha
Helix 41	AE5	B	447	452	Right-handed alpha
Helix 42	AE6	B	469	475	Right-handed alpha
Helix 43	AE7	B	490	497	Right-handed alpha
Helix 44	AE8	B	499	504	Right-handed alpha
Helix 45	AE9	B	516	526	Right-handed alpha
Helix 46	AF1	B	546	560	Right-handed alpha
Helix 47	AF2	B	561	572	Right-handed alpha
Helix 48	AF3	B	599	606	Right-handed alpha
Helix 49	AF4	B	615	619	Right-handed 310
Helix 50	AF5	B	632	645	Right-handed alpha
Helix 51	AF6	B	648	666	Right-handed alpha
Helix 52	AF7	B	672	689	Right-handed alpha

There are 15 sheets in PDB entry 7Y04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	B	165	167	anti-parallel
Strand 3	B	155	159	anti-parallel
Strand 4	B	143	147	anti-parallel
Strand 5	B	180	183	anti-parallel
Strand 6	B	83	87	anti-parallel
Strand 7	B	73	78	anti-parallel
Strand 8	B	213	215	parallel
Strand 9	B	280	281	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	281	first strand
Strand 2	A	213	216	anti-parallel
Strand 3	A	73	78	parallel
Strand 4	A	83	87	anti-parallel
Strand 5	A	180	182	anti-parallel
Strand 6	A	143	146	anti-parallel
Strand 7	A	155	159	anti-parallel
Strand 8	A	165	169	anti-parallel
Strand 9	B	12	15	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	B	18	19	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	323	first strand
Strand 2	A	329	335	anti-parallel
Strand 3	A	378	383	anti-parallel
Strand 4	A	353	357	parallel
Strand 5	A	361	363	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	457	first strand
Strand 2	A	467	468	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	513	first strand
Strand 2	A	483	487	parallel
Strand 3	A	531	535	parallel
Strand 4	A	527	528	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	592	first strand
Strand 2	A	625	626	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	323	first strand
Strand 2	B	329	335	anti-parallel
Strand 3	B	378	383	anti-parallel
Strand 4	B	353	357	parallel
Strand 5	B	361	364	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	457	first strand
Strand 2	B	467	468	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	513	first strand
Strand 2	B	483	487	parallel
Strand 3	B	533	535	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	592	first strand
Strand 2	B	625	626	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	68	first strand
Strand 2	C	73	79	anti-parallel
Strand 3	C	14	19	anti-parallel
Strand 4	C	6	10	anti-parallel
Strand 5	C	99	101	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	30	first strand
Strand 2	C	35	42	anti-parallel
Strand 3	C	50	54	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	68	first strand
Strand 2	D	73	79	anti-parallel
Strand 3	D	14	19	anti-parallel
Strand 4	D	6	10	anti-parallel
Strand 5	D	99	101	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	31	first strand
Strand 2	D	35	42	anti-parallel
Strand 3	D	47	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y04

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y04