Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y09

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y09 entry

There are 12 chains in PDB entry 7Y09 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	PRO 113	ASP 403
A	ILE 345	THR 574
B	ILE 345	ALA 572
C	ILE 345	THR 574
D	ILE 345	MET 568
E	ILE 345	MET 568
F	ILE 345	MET 568
G	ILE 345	MET 568
H	ILE 345	MET 568
K	ILE 345	SER 569
L	ILE 345	CYS 575
J	GLU 3	ASP 136

There are 54 helices in PDB entry 7Y09. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	157	162	Right-handed alpha
Helix 2	AA2	R	165	171	Right-handed alpha
Helix 3	AA3	R	177	204	Right-handed alpha
Helix 4	AA4	R	207	224	Right-handed alpha
Helix 5	AA5	R	230	245	Right-handed alpha
Helix 6	AA6	R	248	280	Right-handed alpha
Helix 7	AA7	R	294	323	Right-handed alpha
Helix 8	AA8	R	341	372	Right-handed alpha
Helix 9	AA9	R	373	376	Right-handed 310
Helix 10	AB1	R	377	381	Right-handed 310
Helix 11	AB2	R	383	392	Right-handed alpha
Helix 12	AB3	A	353	359	Right-handed alpha
Helix 13	AB4	A	414	421	Right-handed alpha
Helix 14	AB5	A	460	465	Right-handed alpha
Helix 15	AB6	A	525	531	Right-handed alpha
Helix 16	AB7	B	353	361	Right-handed alpha
Helix 17	AB8	B	414	420	Right-handed alpha
Helix 18	AB9	B	460	466	Right-handed alpha
Helix 19	AC1	B	525	531	Right-handed alpha
Helix 20	AC2	C	353	361	Right-handed alpha
Helix 21	AC3	C	414	419	Right-handed alpha
Helix 22	AC4	C	460	466	Right-handed alpha
Helix 23	AC5	C	525	530	Right-handed alpha
Helix 24	AC6	D	353	360	Right-handed alpha
Helix 25	AC7	D	414	420	Right-handed alpha
Helix 26	AC8	D	460	467	Right-handed alpha
Helix 27	AC9	D	524	531	Right-handed alpha
Helix 28	AD1	E	353	361	Right-handed alpha
Helix 29	AD2	E	414	421	Right-handed alpha
Helix 30	AD3	E	460	467	Right-handed alpha
Helix 31	AD4	E	524	531	Right-handed alpha
Helix 32	AD5	F	353	361	Right-handed alpha
Helix 33	AD6	F	414	420	Right-handed alpha
Helix 34	AD7	F	460	467	Right-handed alpha
Helix 35	AD8	F	524	530	Right-handed alpha
Helix 36	AD9	G	353	361	Right-handed alpha
Helix 37	AE1	G	414	420	Right-handed alpha
Helix 38	AE2	G	460	466	Right-handed alpha
Helix 39	AE3	G	525	530	Right-handed alpha
Helix 40	AE4	G	553	558	Right-handed alpha
Helix 41	AE5	H	353	361	Right-handed alpha
Helix 42	AE6	H	414	421	Right-handed alpha
Helix 43	AE7	H	460	467	Right-handed alpha
Helix 44	AE8	H	524	531	Right-handed alpha
Helix 45	AE9	H	553	557	Right-handed 310
Helix 46	AF1	K	353	361	Right-handed alpha
Helix 47	AF2	K	414	420	Right-handed alpha
Helix 48	AF3	K	460	467	Right-handed alpha
Helix 49	AF4	K	524	530	Right-handed alpha
Helix 50	AF5	L	355	360	Right-handed alpha
Helix 51	AF6	L	414	420	Right-handed alpha
Helix 52	AF7	L	460	467	Right-handed alpha
Helix 53	AF8	L	524	530	Right-handed alpha
Helix 54	AF9	J	64	69	Right-handed alpha

There are 57 sheets in PDB entry 7Y09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	350	first strand
Strand 2	A	366	370	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	383	first strand
Strand 2	A	389	392	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	427	first strand
Strand 2	A	438	441	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	469	479	anti-parallel
Strand 3	A	515	524	anti-parallel
Strand 4	A	500	502	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	469	479	anti-parallel
Strand 3	A	515	524	anti-parallel
Strand 4	A	506	507	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	485	490	anti-parallel
Strand 3	A	534	539	anti-parallel
Strand 4	A	547	552	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	561	562	first strand
Strand 2	B	561	569	parallel
Strand 3	A	561	569	parallel
Strand 4	J	59	63	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	350	first strand
Strand 2	B	366	370	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	383	first strand
Strand 2	B	424	429	anti-parallel
Strand 3	B	437	441	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	457	first strand
Strand 2	B	469	479	anti-parallel
Strand 3	B	515	524	anti-parallel
Strand 4	B	500	502	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	457	first strand
Strand 2	B	469	479	anti-parallel
Strand 3	B	515	524	anti-parallel
Strand 4	B	506	507	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	494	first strand
Strand 2	B	485	490	anti-parallel
Strand 3	B	534	539	anti-parallel
Strand 4	B	547	552	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	350	first strand
Strand 2	C	363	372	anti-parallel
Strand 3	C	405	408	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	350	first strand
Strand 2	C	363	372	anti-parallel
Strand 3	C	411	413	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	383	first strand
Strand 2	C	424	429	anti-parallel
Strand 3	C	437	441	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	457	first strand
Strand 2	C	469	479	anti-parallel
Strand 3	C	519	524	anti-parallel
Strand 4	C	500	502	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	457	first strand
Strand 2	C	469	479	anti-parallel
Strand 3	C	515	517	anti-parallel
Strand 4	C	506	507	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	493	494	first strand
Strand 2	C	485	490	anti-parallel
Strand 3	C	535	539	anti-parallel
Strand 4	C	547	550	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	565	566	first strand
Strand 2	D	565	567	parallel
Strand 3	E	565	567	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	350	first strand
Strand 2	D	364	370	anti-parallel
Strand 3	D	408	412	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	383	first strand
Strand 2	D	424	430	anti-parallel
Strand 3	D	437	441	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	457	first strand
Strand 2	D	470	479	anti-parallel
Strand 3	D	515	523	anti-parallel
Strand 4	D	500	502	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	457	first strand
Strand 2	D	470	479	anti-parallel
Strand 3	D	515	523	anti-parallel
Strand 4	D	506	507	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	493	494	first strand
Strand 2	D	485	490	anti-parallel
Strand 3	D	534	539	anti-parallel
Strand 4	D	547	552	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	350	first strand
Strand 2	E	363	372	anti-parallel
Strand 3	E	405	413	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	424	428	first strand
Strand 2	E	437	441	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	457	first strand
Strand 2	E	470	479	anti-parallel
Strand 3	E	515	523	anti-parallel
Strand 4	E	500	502	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	457	first strand
Strand 2	E	470	479	anti-parallel
Strand 3	E	515	523	anti-parallel
Strand 4	E	506	507	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	493	494	first strand
Strand 2	E	485	490	anti-parallel
Strand 3	E	534	539	anti-parallel
Strand 4	E	547	552	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	363	365	first strand
Strand 2	F	411	413	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	379	384	first strand
Strand 2	F	424	429	anti-parallel
Strand 3	F	440	441	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	457	first strand
Strand 2	F	470	479	anti-parallel
Strand 3	F	515	523	anti-parallel
Strand 4	F	500	502	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	457	first strand
Strand 2	F	470	479	anti-parallel
Strand 3	F	515	523	anti-parallel
Strand 4	F	506	507	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	493	494	first strand
Strand 2	F	484	490	anti-parallel
Strand 3	F	535	540	anti-parallel
Strand 4	F	548	550	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	565	567	first strand
Strand 2	G	565	567	parallel
Strand 3	H	564	567	parallel
Strand 4	K	564	567	parallel
Strand 5	L	565	567	parallel
Strand 6	J	38	40	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	347	350	first strand
Strand 2	G	364	369	anti-parallel
Strand 3	G	411	412	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	424	428	first strand
Strand 2	G	437	441	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	453	457	first strand
Strand 2	G	469	479	anti-parallel
Strand 3	G	519	524	anti-parallel
Strand 4	G	500	502	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	453	457	first strand
Strand 2	G	469	479	anti-parallel
Strand 3	G	515	517	anti-parallel
Strand 4	G	506	507	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	493	494	first strand
Strand 2	G	485	490	anti-parallel
Strand 3	G	535	539	anti-parallel
Strand 4	G	547	550	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	346	350	first strand
Strand 2	H	364	370	anti-parallel
Strand 3	H	411	412	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	379	383	first strand
Strand 2	H	424	429	anti-parallel
Strand 3	H	439	441	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	453	457	first strand
Strand 2	H	470	479	anti-parallel
Strand 3	H	519	523	anti-parallel
Strand 4	H	500	502	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	453	457	first strand
Strand 2	H	470	479	anti-parallel
Strand 3	H	515	517	anti-parallel
Strand 4	H	506	507	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	493	494	first strand
Strand 2	H	485	490	anti-parallel
Strand 3	H	535	539	anti-parallel
Strand 4	H	547	550	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	347	350	first strand
Strand 2	K	364	369	anti-parallel
Strand 3	K	407	412	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	379	383	first strand
Strand 2	K	424	429	anti-parallel
Strand 3	K	437	441	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	453	457	first strand
Strand 2	K	470	479	anti-parallel
Strand 3	K	515	523	anti-parallel
Strand 4	K	500	502	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	453	457	first strand
Strand 2	K	470	479	anti-parallel
Strand 3	K	515	523	anti-parallel
Strand 4	K	506	507	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	493	494	first strand
Strand 2	K	485	490	anti-parallel
Strand 3	K	535	539	anti-parallel
Strand 4	K	547	550	anti-parallel

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There are 5 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	561	562	first strand
Strand 2	L	561	562	parallel
Strand 3	J	33	35	parallel
Strand 4	J	17	21	anti-parallel
Strand 5	J	5	8	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	369	372	first strand
Strand 2	L	405	407	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	379	384	first strand
Strand 2	L	424	429	anti-parallel
Strand 3	L	438	441	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	456	first strand
Strand 2	L	470	479	anti-parallel
Strand 3	L	519	523	anti-parallel
Strand 4	L	500	502	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	456	first strand
Strand 2	L	470	479	anti-parallel
Strand 3	L	515	517	anti-parallel
Strand 4	L	506	507	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	493	494	first strand
Strand 2	L	485	490	anti-parallel
Strand 3	L	535	539	anti-parallel
Strand 4	L	548	551	anti-parallel

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There are 2 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	110	116	first strand
Strand 2	J	121	127	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y09

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y09