Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y0D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y0D entry

There are 8 chains in PDB entry 7Y0D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 19	GLU 364
B	PRO 19	GLU 364
C	PRO 19	GLU 364
D	PRO 19	GLU 364
E	PRO 19	GLU 364
F	PRO 19	GLU 364
G	PRO 19	GLU 364
H	PRO 19	GLU 364

There are152 helices in PDB entry 7Y0D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	28	Right-handed alpha
Helix 2	AA2	A	32	44	Right-handed alpha
Helix 3	AA3	A	55	61	Right-handed alpha
Helix 4	AA4	A	73	81	Right-handed alpha
Helix 5	AA5	A	115	128	Right-handed alpha
Helix 6	AA6	A	155	189	Right-handed alpha
Helix 7	AA7	A	195	223	Right-handed alpha
Helix 8	AA8	A	228	238	Right-handed alpha
Helix 9	AA9	A	239	251	Right-handed alpha
Helix 10	AB1	A	259	273	Right-handed alpha
Helix 11	AB2	A	274	279	Right-handed alpha
Helix 12	AB3	A	280	289	Right-handed alpha
Helix 13	AB4	A	293	299	Right-handed alpha
Helix 14	AB5	A	306	311	Right-handed alpha
Helix 15	AB6	A	316	328	Right-handed alpha
Helix 16	AB7	A	329	335	Right-handed alpha
Helix 17	AB8	A	337	343	Right-handed alpha
Helix 18	AB9	A	348	361	Right-handed alpha
Helix 19	AC1	A	362	364	Right-handed 310
Helix 20	AC2	B	20	28	Right-handed alpha
Helix 21	AC3	B	32	44	Right-handed alpha
Helix 22	AC4	B	55	61	Right-handed alpha
Helix 23	AC5	B	73	81	Right-handed alpha
Helix 24	AC6	B	82	84	Right-handed 310
Helix 25	AC7	B	115	128	Right-handed alpha
Helix 26	AC8	B	145	149	Right-handed 310
Helix 27	AC9	B	155	190	Right-handed alpha
Helix 28	AD1	B	194	223	Right-handed alpha
Helix 29	AD2	B	228	238	Right-handed alpha
Helix 30	AD3	B	239	251	Right-handed alpha
Helix 31	AD4	B	259	273	Right-handed alpha
Helix 32	AD5	B	274	279	Right-handed alpha
Helix 33	AD6	B	280	289	Right-handed alpha
Helix 34	AD7	B	305	310	Right-handed alpha
Helix 35	AD8	B	316	328	Right-handed alpha
Helix 36	AD9	B	329	335	Right-handed alpha
Helix 37	AE1	B	339	344	Right-handed alpha
Helix 38	AE2	B	348	363	Right-handed alpha
Helix 39	AE3	C	20	28	Right-handed alpha
Helix 40	AE4	C	32	44	Right-handed alpha
Helix 41	AE5	C	55	61	Right-handed alpha
Helix 42	AE6	C	73	81	Right-handed alpha
Helix 43	AE7	C	115	128	Right-handed alpha
Helix 44	AE8	C	155	190	Right-handed alpha
Helix 45	AE9	C	194	223	Right-handed alpha
Helix 46	AF1	C	228	238	Right-handed alpha
Helix 47	AF2	C	239	251	Right-handed alpha
Helix 48	AF3	C	259	273	Right-handed alpha
Helix 49	AF4	C	280	289	Right-handed alpha
Helix 50	AF5	C	293	299	Right-handed 310
Helix 51	AF6	C	305	310	Right-handed alpha
Helix 52	AF7	C	316	328	Right-handed alpha
Helix 53	AF8	C	329	335	Right-handed alpha
Helix 54	AF9	C	339	344	Right-handed alpha
Helix 55	AG1	C	348	363	Right-handed alpha
Helix 56	AG2	D	20	28	Right-handed alpha
Helix 57	AG3	D	32	45	Right-handed alpha
Helix 58	AG4	D	55	62	Right-handed alpha
Helix 59	AG5	D	75	83	Right-handed alpha
Helix 60	AG6	D	115	128	Right-handed alpha
Helix 61	AG7	D	145	149	Right-handed 310
Helix 62	AG8	D	155	190	Right-handed alpha
Helix 63	AG9	D	194	223	Right-handed alpha
Helix 64	AH1	D	228	237	Right-handed alpha
Helix 65	AH2	D	240	251	Right-handed alpha
Helix 66	AH3	D	259	273	Right-handed alpha
Helix 67	AH4	D	274	279	Right-handed alpha
Helix 68	AH5	D	280	289	Right-handed alpha
Helix 69	AH6	D	293	297	Right-handed 310
Helix 70	AH7	D	305	310	Right-handed alpha
Helix 71	AH8	D	316	328	Right-handed alpha
Helix 72	AH9	D	330	335	Right-handed alpha
Helix 73	AI1	D	339	344	Right-handed alpha
Helix 74	AI2	D	348	363	Right-handed alpha
Helix 75	AI3	E	20	28	Right-handed alpha
Helix 76	AI4	E	32	44	Right-handed alpha
Helix 77	AI5	E	55	61	Right-handed alpha
Helix 78	AI6	E	73	81	Right-handed alpha
Helix 79	AI7	E	82	84	Right-handed 310
Helix 80	AI8	E	116	128	Right-handed alpha
Helix 81	AI9	E	146	149	Right-handed 310
Helix 82	AJ1	E	155	190	Right-handed alpha
Helix 83	AJ2	E	194	223	Right-handed alpha
Helix 84	AJ3	E	228	238	Right-handed alpha
Helix 85	AJ4	E	239	251	Right-handed alpha
Helix 86	AJ5	E	259	272	Right-handed alpha
Helix 87	AJ6	E	274	279	Right-handed alpha
Helix 88	AJ7	E	280	289	Right-handed alpha
Helix 89	AJ8	E	293	299	Right-handed 310
Helix 90	AJ9	E	305	310	Right-handed alpha
Helix 91	AK1	E	316	328	Right-handed alpha
Helix 92	AK2	E	329	335	Right-handed alpha
Helix 93	AK3	E	339	344	Right-handed alpha
Helix 94	AK4	E	349	364	Right-handed alpha
Helix 95	AK5	F	20	28	Right-handed alpha
Helix 96	AK6	F	32	44	Right-handed alpha
Helix 97	AK7	F	55	61	Right-handed alpha
Helix 98	AK8	F	73	81	Right-handed alpha
Helix 99	AK9	F	82	84	Right-handed 310
Helix 100	AL1	F	115	128	Right-handed alpha
Helix 101	AL2	F	145	149	Right-handed 310
Helix 102	AL3	F	155	189	Right-handed alpha
Helix 103	AL4	F	194	223	Right-handed alpha
Helix 104	AL5	F	228	237	Right-handed alpha
Helix 105	AL6	F	240	251	Right-handed alpha
Helix 106	AL7	F	259	273	Right-handed alpha
Helix 107	AL8	F	274	279	Right-handed alpha
Helix 108	AL9	F	280	289	Right-handed alpha
Helix 109	AM1	F	294	299	Right-handed alpha
Helix 110	AM2	F	305	311	Right-handed alpha
Helix 111	AM3	F	316	328	Right-handed alpha
Helix 112	AM4	F	329	336	Right-handed alpha
Helix 113	AM5	F	337	344	Right-handed alpha
Helix 114	AM6	F	348	364	Right-handed alpha
Helix 115	AM7	G	20	28	Right-handed alpha
Helix 116	AM8	G	32	44	Right-handed alpha
Helix 117	AM9	G	55	62	Right-handed alpha
Helix 118	AN1	G	73	81	Right-handed alpha
Helix 119	AN2	G	82	84	Right-handed 310
Helix 120	AN3	G	115	128	Right-handed alpha
Helix 121	AN4	G	145	149	Right-handed 310
Helix 122	AN5	G	155	190	Right-handed alpha
Helix 123	AN6	G	194	223	Right-handed alpha
Helix 124	AN7	G	228	238	Right-handed alpha
Helix 125	AN8	G	239	251	Right-handed alpha
Helix 126	AN9	G	259	272	Right-handed alpha
Helix 127	AO1	G	274	279	Right-handed alpha
Helix 128	AO2	G	280	289	Right-handed alpha
Helix 129	AO3	G	293	299	Right-handed 310
Helix 130	AO4	G	305	310	Right-handed alpha
Helix 131	AO5	G	316	328	Right-handed alpha
Helix 132	AO6	G	329	335	Right-handed alpha
Helix 133	AO7	G	339	344	Right-handed alpha
Helix 134	AO8	G	351	364	Right-handed alpha
Helix 135	AO9	H	20	28	Right-handed alpha
Helix 136	AP1	H	32	44	Right-handed alpha
Helix 137	AP2	H	55	62	Right-handed alpha
Helix 138	AP3	H	73	81	Right-handed alpha
Helix 139	AP4	H	82	84	Right-handed 310
Helix 140	AP5	H	115	128	Right-handed alpha
Helix 141	AP6	H	155	189	Right-handed alpha
Helix 142	AP7	H	194	223	Right-handed alpha
Helix 143	AP8	H	228	238	Right-handed alpha
Helix 144	AP9	H	240	251	Right-handed alpha
Helix 145	AQ1	H	259	273	Right-handed alpha
Helix 146	AQ2	H	280	289	Right-handed alpha
Helix 147	AQ3	H	293	298	Right-handed alpha
Helix 148	AQ4	H	305	310	Right-handed alpha
Helix 149	AQ5	H	316	328	Right-handed alpha
Helix 150	AQ6	H	329	335	Right-handed alpha
Helix 151	AQ7	H	339	344	Right-handed alpha
Helix 152	AQ8	H	348	363	Right-handed alpha

There are 20 sheets in PDB entry 7Y0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	71	first strand
Strand 2	A	95	99	anti-parallel
Strand 3	A	87	89	anti-parallel
Strand 4	A	48	52	parallel
Strand 5	A	132	135	anti-parallel
Strand 6	A	142	144	anti-parallel
Strand 7	A	151	153	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	102	103	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	A	300	301	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	98	103	anti-parallel
Strand 3	B	86	88	anti-parallel
Strand 4	B	48	51	parallel
Strand 5	B	132	135	anti-parallel
Strand 6	B	142	144	anti-parallel
Strand 7	B	151	152	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	95	96	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	95	99	anti-parallel
Strand 3	C	87	89	anti-parallel
Strand 4	C	48	52	parallel
Strand 5	C	132	135	anti-parallel
Strand 6	C	142	146	anti-parallel
Strand 7	C	149	152	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	63	first strand
Strand 2	C	102	103	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	89	first strand
Strand 2	D	48	52	parallel
Strand 3	D	132	135	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	71	first strand
Strand 2	D	95	96	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	144	first strand
Strand 2	D	151	153	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	89	first strand
Strand 2	E	48	52	parallel
Strand 3	E	132	135	anti-parallel
Strand 4	E	142	145	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	63	first strand
Strand 2	E	102	103	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	71	first strand
Strand 2	E	95	96	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	63	first strand
Strand 2	F	95	103	anti-parallel
Strand 3	F	70	71	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	63	first strand
Strand 2	F	95	103	anti-parallel
Strand 3	F	86	89	anti-parallel
Strand 4	F	48	52	parallel
Strand 5	F	132	135	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	144	first strand
Strand 2	F	151	153	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	89	first strand
Strand 2	G	48	52	parallel
Strand 3	G	132	135	anti-parallel
Strand 4	G	142	144	anti-parallel
Strand 5	G	151	153	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	70	71	first strand
Strand 2	G	95	96	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	71	first strand
Strand 2	H	95	101	anti-parallel
Strand 3	H	86	89	anti-parallel
Strand 4	H	48	52	parallel
Strand 5	H	132	135	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	145	146	first strand
Strand 2	H	149	150	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y0D

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y0D