Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y0J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y0J entry

There are 12 chains in PDB entry 7Y0J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	ASP 1596	ASP 1941
A	ILE 345	TYR 576
B	ILE 345	ALA 572
C	ILE 345	THR 574
D	ILE 345	MET 568
E	ILE 345	MET 568
F	ILE 345	MET 568
G	ILE 345	MET 568
H	ILE 345	MET 568
K	ILE 345	SER 569
L	ILE 345	TYR 576
J	GLU 3	ASP 136

There are 60 helices in PDB entry 7Y0J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	1623	1628	Right-handed alpha
Helix 2	AA2	M	1636	1660	Right-handed alpha
Helix 3	AA3	M	1672	1690	Right-handed alpha
Helix 4	AA4	M	1697	1717	Right-handed alpha
Helix 5	AA5	M	1719	1724	Right-handed alpha
Helix 6	AA6	M	1732	1743	Right-handed alpha
Helix 7	AA7	M	1743	1752	Right-handed alpha
Helix 8	AA8	M	1791	1795	Right-handed 310
Helix 9	AA9	M	1796	1817	Right-handed alpha
Helix 10	AB1	M	1846	1860	Right-handed alpha
Helix 11	AB2	M	1862	1869	Right-handed alpha
Helix 12	AB3	M	1902	1914	Right-handed alpha
Helix 13	AB4	A	353	360	Right-handed alpha
Helix 14	AB5	A	414	421	Right-handed alpha
Helix 15	AB6	A	460	466	Right-handed alpha
Helix 16	AB7	A	524	531	Right-handed alpha
Helix 17	AB8	A	553	557	Right-handed 310
Helix 18	AB9	B	353	361	Right-handed alpha
Helix 19	AC1	B	414	421	Right-handed alpha
Helix 20	AC2	B	460	467	Right-handed alpha
Helix 21	AC3	B	525	530	Right-handed alpha
Helix 22	AC4	B	553	557	Right-handed 310
Helix 23	AC5	C	353	361	Right-handed alpha
Helix 24	AC6	C	414	420	Right-handed alpha
Helix 25	AC7	C	460	466	Right-handed alpha
Helix 26	AC8	C	524	530	Right-handed alpha
Helix 27	AC9	C	567	572	Right-handed 310
Helix 28	AD1	D	353	360	Right-handed alpha
Helix 29	AD2	D	414	421	Right-handed alpha
Helix 30	AD3	D	460	466	Right-handed alpha
Helix 31	AD4	D	496	500	Right-handed 310
Helix 32	AD5	D	525	530	Right-handed alpha
Helix 33	AD6	E	353	361	Right-handed alpha
Helix 34	AD7	E	414	421	Right-handed alpha
Helix 35	AD8	E	460	467	Right-handed alpha
Helix 36	AD9	E	524	529	Right-handed alpha
Helix 37	AE1	E	553	557	Right-handed 310
Helix 38	AE2	F	353	360	Right-handed alpha
Helix 39	AE3	F	414	421	Right-handed alpha
Helix 40	AE4	F	460	467	Right-handed alpha
Helix 41	AE5	F	524	530	Right-handed alpha
Helix 42	AE6	G	353	361	Right-handed alpha
Helix 43	AE7	G	414	421	Right-handed alpha
Helix 44	AE8	G	460	467	Right-handed alpha
Helix 45	AE9	G	525	530	Right-handed alpha
Helix 46	AF1	G	553	558	Right-handed alpha
Helix 47	AF2	H	353	361	Right-handed alpha
Helix 48	AF3	H	414	421	Right-handed alpha
Helix 49	AF4	H	460	467	Right-handed alpha
Helix 50	AF5	H	524	531	Right-handed alpha
Helix 51	AF6	K	353	361	Right-handed alpha
Helix 52	AF7	K	414	421	Right-handed alpha
Helix 53	AF8	K	462	467	Right-handed alpha
Helix 54	AF9	K	524	531	Right-handed alpha
Helix 55	AG1	K	553	557	Right-handed 310
Helix 56	AG2	L	353	361	Right-handed alpha
Helix 57	AG3	L	414	421	Right-handed alpha
Helix 58	AG4	L	460	466	Right-handed alpha
Helix 59	AG5	L	524	530	Right-handed alpha
Helix 60	AG6	J	63	69	Right-handed alpha

There are 56 sheets in PDB entry 7Y0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	350	first strand
Strand 2	A	366	370	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	383	first strand
Strand 2	A	425	427	anti-parallel
Strand 3	A	438	440	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	470	477	anti-parallel
Strand 3	A	519	523	anti-parallel
Strand 4	A	500	502	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	470	477	anti-parallel
Strand 3	A	515	517	anti-parallel
Strand 4	A	506	507	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	487	490	anti-parallel
Strand 3	A	534	539	anti-parallel
Strand 4	A	547	552	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	348	first strand
Strand 2	B	368	370	anti-parallel
Strand 3	B	404	405	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	366	first strand
Strand 2	B	408	410	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	384	first strand
Strand 2	B	424	429	anti-parallel
Strand 3	B	437	441	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	457	first strand
Strand 2	B	469	475	anti-parallel
Strand 3	B	519	524	anti-parallel
Strand 4	B	500	502	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	489	first strand
Strand 2	B	534	539	anti-parallel
Strand 3	B	551	552	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	506	507	first strand
Strand 2	B	515	516	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	350	first strand
Strand 2	C	363	372	anti-parallel
Strand 3	C	405	413	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	383	first strand
Strand 2	C	424	429	anti-parallel
Strand 3	C	437	441	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	457	first strand
Strand 2	C	470	475	anti-parallel
Strand 3	C	519	523	anti-parallel
Strand 4	C	501	502	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	479	first strand
Strand 2	C	515	516	anti-parallel
Strand 3	C	506	507	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	493	494	first strand
Strand 2	C	485	490	anti-parallel
Strand 3	C	534	539	anti-parallel
Strand 4	C	547	552	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	565	566	first strand
Strand 2	D	565	567	parallel
Strand 3	E	565	567	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	349	first strand
Strand 2	D	367	370	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	383	first strand
Strand 2	D	424	429	anti-parallel
Strand 3	D	437	441	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	457	first strand
Strand 2	D	469	475	anti-parallel
Strand 3	D	520	524	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	477	479	first strand
Strand 2	D	515	516	anti-parallel
Strand 3	D	506	507	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	493	494	first strand
Strand 2	D	485	490	anti-parallel
Strand 3	D	534	539	anti-parallel
Strand 4	D	547	552	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	348	first strand
Strand 2	E	368	370	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	363	366	first strand
Strand 2	E	410	413	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	390	391	first strand
Strand 2	E	381	383	anti-parallel
Strand 3	E	424	427	anti-parallel
Strand 4	E	440	441	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	455	457	first strand
Strand 2	E	473	479	anti-parallel
Strand 3	E	515	519	anti-parallel
Strand 4	E	506	507	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	493	494	first strand
Strand 2	E	485	490	anti-parallel
Strand 3	E	534	539	anti-parallel
Strand 4	E	547	548	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	493	494	first strand
Strand 2	E	485	490	anti-parallel
Strand 3	E	534	539	anti-parallel
Strand 4	E	551	552	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	346	350	first strand
Strand 2	F	363	370	anti-parallel
Strand 3	F	410	413	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	389	390	first strand
Strand 2	F	379	383	anti-parallel
Strand 3	F	424	429	anti-parallel
Strand 4	F	437	441	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	455	457	first strand
Strand 2	F	470	475	anti-parallel
Strand 3	F	520	523	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	493	494	first strand
Strand 2	F	485	490	anti-parallel
Strand 3	F	535	539	anti-parallel
Strand 4	F	547	550	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	506	507	first strand
Strand 2	F	515	516	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	565	567	first strand
Strand 2	G	565	567	parallel
Strand 3	H	563	567	parallel
Strand 4	K	563	567	parallel
Strand 5	L	564	568	parallel
Strand 6	J	37	41	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	347	350	first strand
Strand 2	G	363	369	anti-parallel
Strand 3	G	409	413	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	379	383	first strand
Strand 2	G	424	429	anti-parallel
Strand 3	G	439	441	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	455	457	first strand
Strand 2	G	469	479	anti-parallel
Strand 3	G	515	524	anti-parallel
Strand 4	G	506	507	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	485	489	first strand
Strand 2	G	535	539	anti-parallel
Strand 3	G	547	550	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	346	348	first strand
Strand 2	H	368	370	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	363	364	first strand
Strand 2	H	412	413	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	380	383	first strand
Strand 2	H	424	428	anti-parallel
Strand 3	H	437	441	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	453	457	first strand
Strand 2	H	470	477	anti-parallel
Strand 3	H	519	523	anti-parallel
Strand 4	H	500	502	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	493	494	first strand
Strand 2	H	485	490	anti-parallel
Strand 3	H	535	539	anti-parallel
Strand 4	H	547	550	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	506	507	first strand
Strand 2	H	515	516	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	347	350	first strand
Strand 2	K	366	369	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	389	390	first strand
Strand 2	K	380	383	anti-parallel
Strand 3	K	424	428	anti-parallel
Strand 4	K	437	441	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	455	457	first strand
Strand 2	K	470	475	anti-parallel
Strand 3	K	519	523	anti-parallel
Strand 4	K	500	502	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	477	479	first strand
Strand 2	K	515	516	anti-parallel
Strand 3	K	506	507	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	493	494	first strand
Strand 2	K	485	490	anti-parallel
Strand 3	K	535	539	anti-parallel
Strand 4	K	547	550	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	346	350	first strand
Strand 2	L	366	372	anti-parallel
Strand 3	L	405	410	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	379	383	first strand
Strand 2	L	425	429	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	457	first strand
Strand 2	L	470	479	anti-parallel
Strand 3	L	519	523	anti-parallel
Strand 4	L	501	502	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	457	first strand
Strand 2	L	470	479	anti-parallel
Strand 3	L	515	517	anti-parallel
Strand 4	L	506	507	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	493	494	first strand
Strand 2	L	485	490	anti-parallel
Strand 3	L	535	539	anti-parallel
Strand 4	L	547	551	anti-parallel

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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	20	22	first strand
Strand 2	J	32	34	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	110	116	first strand
Strand 2	J	121	127	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y0J

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y0J