Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y0K entry

There is 1 chain in PDB entry 7Y0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5VAL 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7Y0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
41 51Right-handed alpha
Helix 3
AA3
A
72 79Right-handed alpha
Helix 4
AA4
A
103 121Right-handed alpha
Helix 5
AA5
A
133 137Right-handed 310
Helix 6
AA6
A
140 144Right-handed 310
Helix 7
AA7
A
166 189Right-handed alpha
Helix 8
AA8
A
221 234Right-handed alpha
Helix 9
AA9
A
247 260Right-handed alpha
Helix 10
AB1
A
277 288Right-handed alpha
Helix 11
AB2
A
289 292Right-handed 310
Helix 12
AB3
A
315 323Right-handed alpha
Helix 13
AB4
A
328 340Right-handed alpha
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There are 3 sheets in PDB entry 7Y0K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
30 35parallel
Strand 3
A
6 10parallel
Strand 4
A
84 87parallel
Strand 5
A
127 131parallel
Strand 6
A
194 200parallel
Strand 7
A
267 270parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
312 314parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
241 246parallel
Strand 3
A
274 276anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il