Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y0W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y0W entry

There are 5 chains in PDB entry 7Y0W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1VAL 123
B
 ASP 1ILE 107
H
 VAL 2SER 120
L
 GLU 1LYS 109
R
 LEU 335LYS 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 7Y0W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
79 83Right-handed 310
Helix 2
AA2
H
87 91Right-handed 310
Helix 3
AA3
L
81 85Right-handed 310
Helix 4
AA4
R
349 353Right-handed 310
Helix 5
AA5
R
364 371Right-handed 310
Helix 6
AA6
R
405 407Right-handed 310
Helix 7
AA7
R
417 422Right-handed alpha
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There are 13 sheets in PDB entry 7Y0W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
78 84anti-parallel
Strand 4
A
70 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
119 122parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
45 51anti-parallel
Strand 6
A
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
119 122parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
114 115anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
70 75anti-parallel
Strand 4
B
62 65anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
103 106parallel
Strand 3
B
85 86anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
34 37anti-parallel
Strand 3
B
88 89anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
45 52anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
93 98anti-parallel
Strand 5
H
109 111anti-parallel
Strand 6
H
3 6parallel
Strand 7
H
18 23anti-parallel
Strand 8
H
79 83anti-parallel
Strand 9
H
68 72anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
45 52anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
93 98anti-parallel
Strand 5
H
114 115anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
19 24anti-parallel
Strand 3
L
72 77anti-parallel
Strand 4
L
64 69anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
104 107parallel
Strand 3
L
87 92anti-parallel
Strand 4
L
35 40anti-parallel
Strand 5
L
47 51anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
354 358first strand
Strand 2
R
394 403anti-parallel
Strand 3
R
507 516anti-parallel
Strand 4
R
432 437anti-parallel
Strand 5
R
375 379anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
452 454first strand
Strand 2
R
492 494anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
473 474first strand
Strand 2
R
488 489anti-parallel
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