Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y17

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Y17 entry

There are 6 chains in PDB entry 7Y17 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 60	TRP 598
C	HIS 4	VAL 420
D	PRO 5	ILE 421
A	SER 60	TRP 598
E	SER 61	LYS 599
F	HIS 4	ILE 421

There are 89 helices in PDB entry 7Y17. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	171	176	Right-handed alpha
Helix 2	AA2	B	177	183	Right-handed 310
Helix 3	AA3	B	225	241	Right-handed alpha
Helix 4	AA4	B	256	270	Right-handed alpha
Helix 5	AA5	B	327	330	Right-handed 310
Helix 6	AA6	B	331	351	Right-handed alpha
Helix 7	AA7	B	367	381	Right-handed alpha
Helix 8	AA8	B	395	399	Right-handed alpha
Helix 9	AA9	B	423	434	Right-handed alpha
Helix 10	AB1	B	474	483	Right-handed alpha
Helix 11	AB2	B	493	499	Right-handed alpha
Helix 12	AB3	B	512	519	Right-handed alpha
Helix 13	AB4	B	567	572	Right-handed alpha
Helix 14	AB5	B	573	576	Right-handed 310
Helix 15	AB6	C	10	13	Right-handed 310
Helix 16	AB7	C	14	24	Right-handed alpha
Helix 17	AB8	C	32	54	Right-handed alpha
Helix 18	AB9	C	57	75	Right-handed alpha
Helix 19	AC1	C	81	101	Right-handed alpha
Helix 20	AC2	C	122	134	Right-handed alpha
Helix 21	AC3	C	139	158	Right-handed alpha
Helix 22	AC4	C	178	197	Right-handed alpha
Helix 23	AC5	C	210	225	Right-handed alpha
Helix 24	AC6	C	229	241	Right-handed alpha
Helix 25	AC7	C	245	264	Right-handed alpha
Helix 26	AC8	C	265	283	Right-handed alpha
Helix 27	AC9	C	300	316	Right-handed alpha
Helix 28	AD1	C	320	334	Right-handed alpha
Helix 29	AD2	C	336	349	Right-handed alpha
Helix 30	AD3	C	353	371	Right-handed alpha
Helix 31	AD4	D	14	24	Right-handed alpha
Helix 32	AD5	D	34	54	Right-handed alpha
Helix 33	AD6	D	57	76	Right-handed alpha
Helix 34	AD7	D	81	101	Right-handed alpha
Helix 35	AD8	D	113	120	Right-handed alpha
Helix 36	AD9	D	122	135	Right-handed alpha
Helix 37	AE1	D	139	157	Right-handed alpha
Helix 38	AE2	D	157	162	Right-handed alpha
Helix 39	AE3	D	177	197	Right-handed alpha
Helix 40	AE4	D	212	228	Right-handed alpha
Helix 41	AE5	D	230	242	Right-handed alpha
Helix 42	AE6	D	246	262	Right-handed alpha
Helix 43	AE7	D	265	276	Right-handed alpha
Helix 44	AE8	D	304	318	Right-handed alpha
Helix 45	AE9	D	320	334	Right-handed alpha
Helix 46	AF1	D	339	351	Right-handed alpha
Helix 47	AF2	D	354	367	Right-handed alpha
Helix 48	AF3	A	225	241	Right-handed alpha
Helix 49	AF4	A	256	269	Right-handed alpha
Helix 50	AF5	A	327	330	Right-handed 310
Helix 51	AF6	A	331	349	Right-handed alpha
Helix 52	AF7	A	367	380	Right-handed alpha
Helix 53	AF8	A	391	397	Right-handed alpha
Helix 54	AF9	A	420	434	Right-handed alpha
Helix 55	AG1	A	445	449	Right-handed 310
Helix 56	AG2	A	477	483	Right-handed alpha
Helix 57	AG3	A	493	497	Right-handed 310
Helix 58	AG4	A	512	519	Right-handed alpha
Helix 59	AG5	A	566	571	Right-handed alpha
Helix 60	AG6	A	572	577	Right-handed alpha
Helix 61	AG7	E	171	176	Right-handed alpha
Helix 62	AG8	E	225	241	Right-handed alpha
Helix 63	AG9	E	256	269	Right-handed alpha
Helix 64	AH1	E	331	351	Right-handed alpha
Helix 65	AH2	E	367	381	Right-handed alpha
Helix 66	AH3	E	420	432	Right-handed alpha
Helix 67	AH4	E	445	449	Right-handed 310
Helix 68	AH5	E	512	519	Right-handed alpha
Helix 69	AH6	E	566	570	Right-handed 310
Helix 70	AH7	E	572	578	Right-handed alpha
Helix 71	AH8	F	12	24	Right-handed alpha
Helix 72	AH9	F	25	29	Right-handed 310
Helix 73	AI1	F	32	50	Right-handed alpha
Helix 74	AI2	F	54	76	Right-handed alpha
Helix 75	AI3	F	82	101	Right-handed alpha
Helix 76	AI4	F	111	119	Right-handed alpha
Helix 77	AI5	F	122	135	Right-handed alpha
Helix 78	AI6	F	139	151	Right-handed alpha
Helix 79	AI7	F	153	158	Right-handed alpha
Helix 80	AI8	F	159	162	Right-handed 310
Helix 81	AI9	F	180	197	Right-handed alpha
Helix 82	AJ1	F	210	226	Right-handed alpha
Helix 83	AJ2	F	229	241	Right-handed alpha
Helix 84	AJ3	F	246	260	Right-handed alpha
Helix 85	AJ4	F	267	281	Right-handed alpha
Helix 86	AJ5	F	301	318	Right-handed alpha
Helix 87	AJ6	F	321	331	Right-handed alpha
Helix 88	AJ7	F	337	350	Right-handed alpha
Helix 89	AJ8	F	354	369	Right-handed alpha

There are 26 sheets in PDB entry 7Y17. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	81	first strand
Strand 2	B	158	164	anti-parallel
Strand 3	B	89	95	anti-parallel
Strand 4	B	116	120	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	B	158	164	anti-parallel
Strand 3	B	89	95	anti-parallel
Strand 4	B	211	212	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	129	130	anti-parallel
Strand 3	B	101	104	anti-parallel
Strand 4	B	107	110	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	282	first strand
Strand 2	B	295	300	anti-parallel
Strand 3	B	319	322	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	437	first strand
Strand 2	B	440	441	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	532	first strand
Strand 2	B	538	542	anti-parallel
Strand 3	B	452	455	anti-parallel
Strand 4	D	408	409	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	510	511	first strand
Strand 2	B	464	467	parallel
Strand 3	B	556	560	parallel
Strand 4	B	488	491	anti-parallel
Strand 5	B	522	526	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	587	first strand
Strand 2	D	6	7	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	7	first strand
Strand 2	A	586	587	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	81	first strand
Strand 2	A	158	163	anti-parallel
Strand 3	A	93	97	anti-parallel
Strand 4	A	116	118	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	129	130	anti-parallel
Strand 3	A	103	104	anti-parallel
Strand 4	A	107	108	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	210	212	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	221	222	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	301	first strand
Strand 2	A	278	282	anti-parallel
Strand 3	A	359	360	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	387	first strand
Strand 2	A	403	405	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	437	first strand
Strand 2	A	440	441	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	542	first strand
Strand 2	A	522	532	anti-parallel
Strand 3	A	486	491	anti-parallel
Strand 4	A	558	559	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	81	first strand
Strand 2	E	158	164	anti-parallel
Strand 3	E	90	99	anti-parallel
Strand 4	E	116	120	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	81	first strand
Strand 2	E	158	164	anti-parallel
Strand 3	E	90	99	anti-parallel
Strand 4	E	210	211	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	128	130	anti-parallel
Strand 3	E	101	104	anti-parallel
Strand 4	E	107	110	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	317	321	first strand
Strand 2	E	296	301	anti-parallel
Strand 3	E	278	282	anti-parallel
Strand 4	E	357	360	parallel
Strand 5	E	246	250	parallel
Strand 6	E	385	387	parallel
Strand 7	E	403	405	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	435	437	first strand
Strand 2	E	440	441	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	539	541	first strand
Strand 2	E	452	454	anti-parallel
Strand 3	F	408	409	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	465	466	first strand
Strand 2	E	510	511	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	522	525	first strand
Strand 2	E	488	491	anti-parallel
Strand 3	E	558	559	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	586	587	first strand
Strand 2	F	6	7	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Y17

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y17