Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y1J entry

There is 1 chain in PDB entry 7Y1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 216MET 1542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 7Y1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
216 227Right-handed alpha
Helix 2
AA2
A
228 230Right-handed 310
Helix 3
AA3
A
231 241Right-handed alpha
Helix 4
AA4
A
252 255Right-handed 310
Helix 5
AA5
A
256 274Right-handed alpha
Helix 6
AA6
A
284 293Right-handed alpha
Helix 7
AA7
A
294 312Right-handed alpha
Helix 8
AA8
A
312 324Right-handed alpha
Helix 9
AA9
A
343 346Right-handed 310
Helix 10
AB1
A
347 395Right-handed alpha
Helix 11
AB2
A
405 416Right-handed alpha
Helix 12
AB3
A
416 450Right-handed alpha
Helix 13
AB4
A
451 462Right-handed alpha
Helix 14
AB5
A
462 497Right-handed alpha
Helix 15
AB6
A
498 506Right-handed alpha
Helix 16
AB7
A
507 558Right-handed alpha
Helix 17
AB8
A
564 607Right-handed alpha
Helix 18
AB9
A
706 715Right-handed alpha
Helix 19
AC1
A
761 768Right-handed alpha
Helix 20
AC2
A
773 784Right-handed alpha
Helix 21
AC3
A
786 792Right-handed alpha
Helix 22
AC4
A
795 799Right-handed 310
Helix 23
AC5
A
809 824Right-handed alpha
Helix 24
AC6
A
839 850Right-handed alpha
Helix 25
AC7
A
853 858Right-handed alpha
Helix 26
AC8
A
868 875Right-handed 310
Helix 27
AC9
A
891 899Right-handed alpha
Helix 28
AD1
A
899 921Right-handed alpha
Helix 29
AD2
A
924 937Right-handed alpha
Helix 30
AD3
A
967 971Right-handed alpha
Helix 31
AD4
A
974 984Right-handed alpha
Helix 32
AD5
A
986 1016Right-handed alpha
Helix 33
AD6
A
1028 1074Right-handed alpha
Helix 34
AD7
A
1076 1083Right-handed alpha
Helix 35
AD8
A
1084 1102Right-handed alpha
Helix 36
AD9
A
1102 1128Right-handed alpha
Helix 37
AE1
A
1130 1176Right-handed alpha
Helix 38
AE2
A
1177 1185Right-handed alpha
Helix 39
AE3
A
1186 1237Right-handed alpha
Helix 40
AE4
A
1240 1283Right-handed alpha
Helix 41
AE5
A
1348 1356Right-handed alpha
Helix 42
AE6
A
1377 1384Right-handed alpha
Helix 43
AE7
A
1399 1404Right-handed alpha
Helix 44
AE8
A
1410 1421Right-handed alpha
Helix 45
AE9
A
1423 1430Right-handed alpha
Helix 46
AF1
A
1432 1435Right-handed 310
Helix 47
AF2
A
1446 1462Right-handed alpha
Helix 48
AF3
A
1476 1491Right-handed alpha
Helix 49
AF4
A
1502 1507Right-handed 310
Helix 50
AF5
A
1525 1532Right-handed alpha
Helix 51
AF6
A
1535 1542Right-handed alpha
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There are 5 sheets in PDB entry 7Y1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
682 692first strand
Strand 2
A
666 676anti-parallel
Strand 3
A
719 727anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 751first strand
Strand 2
A
828 832parallel
Strand 3
A
861 865parallel
Strand 4
A
696 700parallel
Strand 5
A
877 881parallel
Strand 6
A
886 890anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1325 1332first strand
Strand 2
A
1308 1316anti-parallel
Strand 3
A
1360 1368anti-parallel
Strand 4
A
1371 1372anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1386 1388first strand
Strand 2
A
1465 1469parallel
Strand 3
A
1495 1499parallel
Strand 4
A
1338 1342parallel
Strand 5
A
1511 1516parallel
Strand 6
A
1519 1524anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1397 1398first strand
Strand 2
A
1437 1438anti-parallel
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