Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y1M entry

There is 1 chain in PDB entry 7Y1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 216VAL 1541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 7Y1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
216 227Right-handed alpha
Helix 2
AA2
A
228 230Right-handed 310
Helix 3
AA3
A
231 238Right-handed alpha
Helix 4
AA4
A
252 255Right-handed 310
Helix 5
AA5
A
256 273Right-handed alpha
Helix 6
AA6
A
284 312Right-handed alpha
Helix 7
AA7
A
312 324Right-handed alpha
Helix 8
AA8
A
343 347Right-handed 310
Helix 9
AA9
A
349 394Right-handed alpha
Helix 10
AB1
A
405 416Right-handed alpha
Helix 11
AB2
A
416 428Right-handed alpha
Helix 12
AB3
A
429 449Right-handed alpha
Helix 13
AB4
A
452 462Right-handed alpha
Helix 14
AB5
A
462 497Right-handed alpha
Helix 15
AB6
A
498 505Right-handed alpha
Helix 16
AB7
A
507 559Right-handed alpha
Helix 17
AB8
A
564 607Right-handed alpha
Helix 18
AB9
A
706 716Right-handed alpha
Helix 19
AC1
A
761 768Right-handed alpha
Helix 20
AC2
A
773 785Right-handed alpha
Helix 21
AC3
A
786 793Right-handed alpha
Helix 22
AC4
A
809 824Right-handed alpha
Helix 23
AC5
A
839 850Right-handed alpha
Helix 24
AC6
A
853 858Right-handed alpha
Helix 25
AC7
A
871 875Right-handed 310
Helix 26
AC8
A
891 899Right-handed alpha
Helix 27
AC9
A
899 912Right-handed alpha
Helix 28
AD1
A
974 985Right-handed alpha
Helix 29
AD2
A
986 1017Right-handed alpha
Helix 30
AD3
A
1028 1074Right-handed alpha
Helix 31
AD4
A
1076 1083Right-handed alpha
Helix 32
AD5
A
1084 1102Right-handed alpha
Helix 33
AD6
A
1102 1128Right-handed alpha
Helix 34
AD7
A
1130 1176Right-handed alpha
Helix 35
AD8
A
1177 1185Right-handed alpha
Helix 36
AD9
A
1186 1237Right-handed alpha
Helix 37
AE1
A
1240 1283Right-handed alpha
Helix 38
AE2
A
1294 1298Right-handed 310
Helix 39
AE3
A
1301 1305Right-handed 310
Helix 40
AE4
A
1347 1357Right-handed alpha
Helix 41
AE5
A
1377 1384Right-handed alpha
Helix 42
AE6
A
1399 1404Right-handed alpha
Helix 43
AE7
A
1410 1421Right-handed alpha
Helix 44
AE8
A
1423 1430Right-handed alpha
Helix 45
AE9
A
1432 1435Right-handed 310
Helix 46
AF1
A
1439 1443Right-handed 310
Helix 47
AF2
A
1446 1462Right-handed alpha
Helix 48
AF3
A
1476 1490Right-handed alpha
Helix 49
AF4
A
1502 1508Right-handed alpha
Helix 50
AF5
A
1525 1530Right-handed alpha
Helix 51
AF6
A
1536 1541Right-handed alpha
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There are 6 sheets in PDB entry 7Y1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
690 691first strand
Strand 2
A
668 671anti-parallel
Strand 3
A
724 727anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
684 687first strand
Strand 2
A
673 676anti-parallel
Strand 3
A
719 720anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 751first strand
Strand 2
A
828 832parallel
Strand 3
A
861 865parallel
Strand 4
A
696 700parallel
Strand 5
A
877 881parallel
Strand 6
A
886 890anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1325 1332first strand
Strand 2
A
1308 1315anti-parallel
Strand 3
A
1361 1368anti-parallel
Strand 4
A
1371 1372anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1386 1388first strand
Strand 2
A
1465 1469parallel
Strand 3
A
1495 1499parallel
Strand 4
A
1337 1341parallel
Strand 5
A
1511 1514parallel
Strand 6
A
1523 1524anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1397 1398first strand
Strand 2
A
1437 1438anti-parallel
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