Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y1U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y1U entry

There is 1 chain in PDB entry 7Y1U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 723
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 7Y1U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 28Right-handed alpha
Helix 2
AA2
A
39 48Right-handed alpha
Helix 3
AA3
A
49 52Right-handed 310
Helix 4
AA4
A
53 57Right-handed 310
Helix 5
AA5
A
60 69Right-handed alpha
Helix 6
AA6
A
85 99Right-handed alpha
Helix 7
AA7
A
112 126Right-handed alpha
Helix 8
AA8
A
130 135Right-handed alpha
Helix 9
AA9
A
144 154Right-handed alpha
Helix 10
AB1
A
176 181Right-handed alpha
Helix 11
AB2
A
223 241Right-handed alpha
Helix 12
AB3
A
256 270Right-handed alpha
Helix 13
AB4
A
272 277Right-handed alpha
Helix 14
AB5
A
277 284Right-handed alpha
Helix 15
AB6
A
287 290Right-handed 310
Helix 16
AB7
A
291 299Right-handed alpha
Helix 17
AB8
A
304 319Right-handed alpha
Helix 18
AB9
A
341 352Right-handed alpha
Helix 19
AC1
A
372 390Right-handed alpha
Helix 20
AC2
A
410 417Right-handed 310
Helix 21
AC3
A
455 474Right-handed alpha
Helix 22
AC4
A
485 500Right-handed alpha
Helix 23
AC5
A
513 528Right-handed alpha
Helix 24
AC6
A
536 553Right-handed alpha
Helix 25
AC7
A
554 558Right-handed 310
Helix 26
AC8
A
579 590Right-handed alpha
Helix 27
AC9
A
596 611Right-handed alpha
Helix 28
AD1
A
612 632Right-handed alpha
Helix 29
AD2
A
644 662Right-handed alpha
Helix 30
AD3
A
665 678Right-handed alpha
Helix 31
AD4
A
679 690Right-handed alpha
Helix 32
AD5
A
704 713Right-handed alpha
Helix 33
AD6
A
715 723Right-handed alpha
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There are 6 sheets in PDB entry 7Y1U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
2 6parallel
Strand 3
A
75 78parallel
Strand 4
A
569 572parallel
Strand 5
A
559 563anti-parallel
Strand 6
A
139 142anti-parallel
Strand 7
A
400 404anti-parallel
Strand 8
A
531 535parallel
Strand 9
A
476 480parallel
Strand 10
A
509 512parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
363 369parallel
Strand 3
A
244 247parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
363 369parallel
Strand 3
A
355 357anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
216 222anti-parallel
Strand 3
A
448 454anti-parallel
Strand 4
A
419 421anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 210first strand
Strand 2
A
191 198anti-parallel
Strand 3
A
426 431anti-parallel
Strand 4
A
437 443anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
331 332anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il