Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y1X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y1X entry

There is 1 chain in PDB entry 7Y1X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 31LEU 707
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7Y1X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 58Right-handed 310
Helix 2
AA2
A
61 81Right-handed alpha
Helix 3
AA3
A
84 97Right-handed alpha
Helix 4
AA4
A
140 145Right-handed 310
Helix 5
AA5
A
239 243Right-handed 310
Helix 6
AA6
A
336 340Right-handed 310
Helix 7
AA7
A
494 503Right-handed alpha
Helix 8
AA8
A
518 525Right-handed alpha
Helix 9
AA9
A
526 530Right-handed 310
Helix 10
AB1
A
531 548Right-handed alpha
Helix 11
AB2
A
552 554Right-handed 310
Helix 12
AB3
A
562 575Right-handed alpha
Helix 13
AB4
A
576 579Right-handed 310
Helix 14
AB5
A
593 597Right-handed 310
Helix 15
AB6
A
598 603Right-handed alpha
Helix 16
AB7
A
604 609Right-handed alpha
Helix 17
AB8
A
613 624Right-handed alpha
Helix 18
AB9
A
625 628Right-handed 310
Helix 19
AC1
A
651 665Right-handed alpha
Helix 20
AC2
A
686 706Right-handed alpha
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There are 10 sheets in PDB entry 7Y1X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
47 50anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
110 116anti-parallel
Strand 3
A
105 107anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
110 116anti-parallel
Strand 3
A
124 128anti-parallel
Strand 4
A
136 139anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 157first strand
Strand 2
A
163 170anti-parallel
Strand 3
A
177 182anti-parallel
Strand 4
A
192 193anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
209 214anti-parallel
Strand 3
A
230 235anti-parallel
Strand 4
A
244 247anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 261first strand
Strand 2
A
267 273anti-parallel
Strand 3
A
279 285anti-parallel
Strand 4
A
294 297anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 310first strand
Strand 2
A
313 318anti-parallel
Strand 3
A
326 331anti-parallel
Strand 4
A
341 344anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 357first strand
Strand 2
A
360 367anti-parallel
Strand 3
A
370 377anti-parallel
Strand 4
A
382 385anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 396first strand
Strand 2
A
405 412anti-parallel
Strand 3
A
415 423anti-parallel
Strand 4
A
428 433anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 452first strand
Strand 2
A
458 466anti-parallel
Strand 3
A
506 510anti-parallel
Strand 4
A
477 480parallel
Strand 5
A
556 561parallel
Strand 6
A
581 585parallel
Strand 7
A
637 643parallel
Strand 8
A
671 676parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il