Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y3V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y3V entry

There are 4 chains in PDB entry 7Y3V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 37PRO 439
B
 MET 37GLU 440
C
 MET 37GLU 440
D
 MET 37GLU 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 7Y3V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 45Right-handed alpha
Helix 2
AA2
A
51 72Right-handed alpha
Helix 3
AA3
A
75 90Right-handed alpha
Helix 4
AA4
A
91 95Right-handed 310
Helix 5
AA5
A
136 141Right-handed 310
Helix 6
AA6
A
149 162Right-handed alpha
Helix 7
AA7
A
167 178Right-handed alpha
Helix 8
AA8
A
180 186Right-handed alpha
Helix 9
AA9
A
196 200Right-handed alpha
Helix 10
AB1
A
224 232Right-handed alpha
Helix 11
AB2
A
234 247Right-handed alpha
Helix 12
AB3
A
252 266Right-handed alpha
Helix 13
AB4
A
279 283Right-handed 310
Helix 14
AB5
A
295 304Right-handed alpha
Helix 15
AB6
A
311 329Right-handed alpha
Helix 16
AB7
A
373 388Right-handed alpha
Helix 17
AB8
A
390 400Right-handed alpha
Helix 18
AB9
B
38 45Right-handed alpha
Helix 19
AC1
B
51 72Right-handed alpha
Helix 20
AC2
B
75 90Right-handed alpha
Helix 21
AC3
B
91 94Right-handed 310
Helix 22
AC4
B
108 112Right-handed 310
Helix 23
AC5
B
136 141Right-handed 310
Helix 24
AC6
B
149 162Right-handed alpha
Helix 25
AC7
B
167 178Right-handed alpha
Helix 26
AC8
B
180 187Right-handed alpha
Helix 27
AC9
B
188 200Right-handed alpha
Helix 28
AD1
B
224 232Right-handed alpha
Helix 29
AD2
B
234 247Right-handed alpha
Helix 30
AD3
B
252 267Right-handed alpha
Helix 31
AD4
B
279 283Right-handed 310
Helix 32
AD5
B
295 304Right-handed alpha
Helix 33
AD6
B
311 329Right-handed alpha
Helix 34
AD7
B
339 344Right-handed 310
Helix 35
AD8
B
373 388Right-handed alpha
Helix 36
AD9
B
390 405Right-handed alpha
Helix 37
AE1
C
38 45Right-handed alpha
Helix 38
AE2
C
51 72Right-handed alpha
Helix 39
AE3
C
75 90Right-handed alpha
Helix 40
AE4
C
91 94Right-handed 310
Helix 41
AE5
C
108 112Right-handed 310
Helix 42
AE6
C
136 140Right-handed 310
Helix 43
AE7
C
149 159Right-handed alpha
Helix 44
AE8
C
167 178Right-handed alpha
Helix 45
AE9
C
180 186Right-handed alpha
Helix 46
AF1
C
191 200Right-handed alpha
Helix 47
AF2
C
224 232Right-handed alpha
Helix 48
AF3
C
234 247Right-handed alpha
Helix 49
AF4
C
252 267Right-handed alpha
Helix 50
AF5
C
279 283Right-handed 310
Helix 51
AF6
C
295 304Right-handed alpha
Helix 52
AF7
C
311 329Right-handed alpha
Helix 53
AF8
C
373 388Right-handed alpha
Helix 54
AF9
C
390 396Right-handed alpha
Helix 55
AG1
C
396 405Right-handed alpha
Helix 56
AG2
D
38 45Right-handed alpha
Helix 57
AG3
D
51 72Right-handed alpha
Helix 58
AG4
D
75 90Right-handed alpha
Helix 59
AG5
D
91 94Right-handed 310
Helix 60
AG6
D
108 112Right-handed 310
Helix 61
AG7
D
136 140Right-handed 310
Helix 62
AG8
D
149 159Right-handed alpha
Helix 63
AG9
D
167 178Right-handed alpha
Helix 64
AH1
D
180 186Right-handed alpha
Helix 65
AH2
D
188 200Right-handed alpha
Helix 66
AH3
D
224 232Right-handed alpha
Helix 67
AH4
D
234 247Right-handed alpha
Helix 68
AH5
D
252 266Right-handed alpha
Helix 69
AH6
D
279 283Right-handed 310
Helix 70
AH7
D
295 304Right-handed alpha
Helix 71
AH8
D
311 329Right-handed alpha
Helix 72
AH9
D
336 343Right-handed alpha
Helix 73
AI1
D
373 388Right-handed alpha
Helix 74
AI2
D
390 405Right-handed alpha
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There are 4 sheets in PDB entry 7Y3V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 122first strand
Strand 2
A
125 132anti-parallel
Strand 3
A
205 211anti-parallel
Strand 4
A
217 222anti-parallel
Strand 5
A
272 276anti-parallel
Strand 6
A
285 291anti-parallel
Strand 7
A
348 354anti-parallel
Strand 8
A
362 368anti-parallel
Strand 9
A
417 425anti-parallel
Strand 10
A
429 436anti-parallel
Strand 11
A
115 122anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 122first strand
Strand 2
B
125 132anti-parallel
Strand 3
B
205 212anti-parallel
Strand 4
B
215 222anti-parallel
Strand 5
B
272 276anti-parallel
Strand 6
B
285 291anti-parallel
Strand 7
B
348 354anti-parallel
Strand 8
B
362 368anti-parallel
Strand 9
B
417 424anti-parallel
Strand 10
B
430 436anti-parallel
Strand 11
B
115 122anti-parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
115 122first strand
Strand 2
C
125 132anti-parallel
Strand 3
C
205 210anti-parallel
Strand 4
C
217 222anti-parallel
Strand 5
C
272 276anti-parallel
Strand 6
C
285 291anti-parallel
Strand 7
C
348 354anti-parallel
Strand 8
C
362 368anti-parallel
Strand 9
C
417 425anti-parallel
Strand 10
C
429 436anti-parallel
Strand 11
C
115 122anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
115 121first strand
Strand 2
D
126 132anti-parallel
Strand 3
D
205 212anti-parallel
Strand 4
D
215 222anti-parallel
Strand 5
D
272 276anti-parallel
Strand 6
D
285 291anti-parallel
Strand 7
D
348 354anti-parallel
Strand 8
D
362 368anti-parallel
Strand 9
D
417 425anti-parallel
Strand 10
D
429 436anti-parallel
Strand 11
D
115 121anti-parallel
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