Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y42


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y42 entry

There are 3 chains in PDB entry 7Y42 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 27SER 1147
B
ALA 27SER 1147
D
ALA 27SER 1147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 7Y42. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
294 304Right-handed alpha
Helix 2
AA2
A
337 342Right-handed alpha
Helix 3
AA3
A
349 353Right-handed 310
Helix 4
AA4
A
364 368Right-handed 310
Helix 5
AA5
A
383 389Right-handed 310
Helix 6
AA6
A
405 410Right-handed 310
Helix 7
AA7
A
616 620Right-handed 310
Helix 8
AA8
A
630 635Right-handed alpha
Helix 9
AA9
A
636 638Right-handed 310
Helix 10
AB1
A
737 743Right-handed alpha
Helix 11
AB2
A
746 755Right-handed alpha
Helix 12
AB3
A
758 783Right-handed alpha
Helix 13
AB4
A
818 824Right-handed alpha
Helix 14
AB5
A
849 856Right-handed alpha
Helix 15
AB6
A
869 874Right-handed alpha
Helix 16
AB7
A
897 907Right-handed alpha
Helix 17
AB8
A
912 918Right-handed alpha
Helix 18
AB9
A
919 939Right-handed alpha
Helix 19
AC1
A
945 965Right-handed alpha
Helix 20
AC2
A
976 984Right-handed alpha
Helix 21
AC3
A
985 1032Right-handed alpha
Helix 22
AC4
A
1140 1146Right-handed alpha
Helix 23
AC5
B
294 304Right-handed alpha
Helix 24
AC6
B
337 342Right-handed alpha
Helix 25
AC7
B
349 353Right-handed 310
Helix 26
AC8
B
364 368Right-handed 310
Helix 27
AC9
B
383 389Right-handed 310
Helix 28
AD1
B
405 410Right-handed 310
Helix 29
AD2
B
616 620Right-handed 310
Helix 30
AD3
B
630 635Right-handed alpha
Helix 31
AD4
B
636 638Right-handed 310
Helix 32
AD5
B
737 743Right-handed alpha
Helix 33
AD6
B
746 755Right-handed alpha
Helix 34
AD7
B
758 783Right-handed alpha
Helix 35
AD8
B
818 824Right-handed alpha
Helix 36
AD9
B
849 856Right-handed alpha
Helix 37
AE1
B
869 874Right-handed alpha
Helix 38
AE2
B
897 907Right-handed alpha
Helix 39
AE3
B
912 918Right-handed alpha
Helix 40
AE4
B
919 939Right-handed alpha
Helix 41
AE5
B
945 965Right-handed alpha
Helix 42
AE6
B
976 984Right-handed alpha
Helix 43
AE7
B
985 1032Right-handed alpha
Helix 44
AE8
B
1140 1146Right-handed alpha
Helix 45
AE9
D
294 304Right-handed alpha
Helix 46
AF1
D
337 342Right-handed alpha
Helix 47
AF2
D
349 353Right-handed 310
Helix 48
AF3
D
364 368Right-handed 310
Helix 49
AF4
D
383 389Right-handed 310
Helix 50
AF5
D
405 410Right-handed 310
Helix 51
AF6
D
616 620Right-handed 310
Helix 52
AF7
D
630 635Right-handed alpha
Helix 53
AF8
D
636 638Right-handed 310
Helix 54
AF9
D
737 743Right-handed alpha
Helix 55
AG1
D
746 755Right-handed alpha
Helix 56
AG2
D
758 783Right-handed alpha
Helix 57
AG3
D
818 824Right-handed alpha
Helix 58
AG4
D
849 856Right-handed alpha
Helix 59
AG5
D
869 874Right-handed alpha
Helix 60
AG6
D
897 907Right-handed alpha
Helix 61
AG7
D
912 918Right-handed alpha
Helix 62
AG8
D
919 939Right-handed alpha
Helix 63
AG9
D
945 965Right-handed alpha
Helix 64
AH1
D
976 984Right-handed alpha
Helix 65
AH2
D
985 1032Right-handed alpha
Helix 66
AH3
D
1140 1146Right-handed alpha
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There are 60 sheets in PDB entry 7Y42. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
28 30first strand
Strand 2
A
61 63anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
42 43first strand
Strand 2
D
565 567parallel
Strand 3
D
573 577anti-parallel
Strand 4
D
584 588anti-parallel
Strand 5
D
549 554anti-parallel
Strand 6
D
538 540anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
50 51first strand
Strand 2
A
275 279anti-parallel
Strand 3
A
285 290anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
54 55first strand
Strand 2
A
271 272anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
91 93first strand
Strand 2
A
266 268anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
104 107first strand
Strand 2
A
116 121anti-parallel
Strand 3
A
126 129anti-parallel
Strand 4
A
170 171anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
311 313first strand
Strand 2
A
595 599anti-parallel
Strand 3
A
609 613anti-parallel
Strand 4
A
648 651anti-parallel
Strand 5
A
643 644anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
327 328first strand
Strand 2
A
542 543parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
357 358first strand
Strand 2
A
395 403anti-parallel
Strand 3
A
507 514anti-parallel
Strand 4
A
431 437anti-parallel
Strand 5
A
376 377anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
391 392first strand
Strand 2
A
524 525anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
452 454first strand
Strand 2
A
492 494anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
473 474first strand
Strand 2
A
488 489anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
538 540first strand
Strand 2
A
549 554anti-parallel
Strand 3
A
584 588anti-parallel
Strand 4
A
573 577anti-parallel
Strand 5
A
565 567anti-parallel
Strand 6
B
42 43parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
654 655first strand
Strand 2
A
691 696parallel
Strand 3
A
670 675anti-parallel
Strand 4
A
664 667anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
702 703first strand
Strand 2
B
788 789parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
711 713first strand
Strand 2
A
1074 1076anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
717 722first strand
Strand 2
A
1065 1070anti-parallel
Strand 3
A
1047 1050anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
725 728first strand
Strand 2
A
1059 1062anti-parallel
Strand 3
A
1053 1056anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
733 736first strand
Strand 2
A
858 861anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
788 789first strand
Strand 2
D
702 703parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1120 1125first strand
Strand 2
A
1086 1090anti-parallel
Strand 3
A
1081 1082anti-parallel
Strand 4
A
1133 1134parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1094 1097first strand
Strand 2
A
1102 1105anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
28 30first strand
Strand 2
B
61 63anti-parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
50 51first strand
Strand 2
B
275 279anti-parallel
Strand 3
B
285 290anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
54 55first strand
Strand 2
B
271 272anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
91 93first strand
Strand 2
B
266 268anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
104 107first strand
Strand 2
B
116 121anti-parallel
Strand 3
B
126 129anti-parallel
Strand 4
B
170 171anti-parallel
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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
311 313first strand
Strand 2
B
595 599anti-parallel
Strand 3
B
609 613anti-parallel
Strand 4
B
648 651anti-parallel
Strand 5
B
643 644anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
327 328first strand
Strand 2
B
542 543parallel
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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
357 358first strand
Strand 2
B
395 403anti-parallel
Strand 3
B
507 514anti-parallel
Strand 4
B
431 437anti-parallel
Strand 5
B
376 377anti-parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
391 392first strand
Strand 2
B
524 525anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
473 474first strand
Strand 2
B
488 489anti-parallel
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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
538 540first strand
Strand 2
B
549 554anti-parallel
Strand 3
B
584 588anti-parallel
Strand 4
B
573 577anti-parallel
Strand 5
B
565 567anti-parallel
Strand 6
D
42 43parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
654 655first strand
Strand 2
B
691 696parallel
Strand 3
B
670 675anti-parallel
Strand 4
B
664 667anti-parallel
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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
702 703first strand
Strand 2
D
788 789parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
711 713first strand
Strand 2
B
1074 1076anti-parallel
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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
717 722first strand
Strand 2
B
1065 1070anti-parallel
Strand 3
B
1047 1050anti-parallel
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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
725 728first strand
Strand 2
B
1059 1062anti-parallel
Strand 3
B
1053 1056anti-parallel
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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
733 736first strand
Strand 2
B
858 861anti-parallel
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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1120 1125first strand
Strand 2
B
1086 1090anti-parallel
Strand 3
B
1081 1082anti-parallel
Strand 4
B
1133 1134parallel
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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1094 1097first strand
Strand 2
B
1102 1105anti-parallel
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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
28 30first strand
Strand 2
D
61 63anti-parallel
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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
50 51first strand
Strand 2
D
275 279anti-parallel
Strand 3
D
285 290anti-parallel
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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
54 55first strand
Strand 2
D
271 272anti-parallel
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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
91 93first strand
Strand 2
D
266 268anti-parallel
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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
104 107first strand
Strand 2
D
116 121anti-parallel
Strand 3
D
126 129anti-parallel
Strand 4
D
170 171anti-parallel
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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
311 313first strand
Strand 2
D
595 599anti-parallel
Strand 3
D
609 613anti-parallel
Strand 4
D
648 651anti-parallel
Strand 5
D
643 644anti-parallel
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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
327 328first strand
Strand 2
D
542 543parallel
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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
357 358first strand
Strand 2
D
395 403anti-parallel
Strand 3
D
507 514anti-parallel
Strand 4
D
431 437anti-parallel
Strand 5
D
376 377anti-parallel
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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
391 392first strand
Strand 2
D
524 525anti-parallel
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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
452 454first strand
Strand 2
D
492 494anti-parallel
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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
473 474first strand
Strand 2
D
488 489anti-parallel
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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
654 655first strand
Strand 2
D
691 696parallel
Strand 3
D
670 675anti-parallel
Strand 4
D
664 667anti-parallel
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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
711 713first strand
Strand 2
D
1074 1076anti-parallel
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There are 3 strands in AG2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
717 722first strand
Strand 2
D
1065 1070anti-parallel
Strand 3
D
1047 1050anti-parallel
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There are 3 strands in AG3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
725 728first strand
Strand 2
D
1059 1062anti-parallel
Strand 3
D
1053 1056anti-parallel
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There are 2 strands in AG4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
733 736first strand
Strand 2
D
858 861anti-parallel
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There are 4 strands in AG5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1120 1125first strand
Strand 2
D
1086 1090anti-parallel
Strand 3
D
1081 1082anti-parallel
Strand 4
D
1133 1134parallel
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There are 2 strands in AG6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1094 1097first strand
Strand 2
D
1102 1105anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il