Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y48


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y48 entry

There is 1 chain in PDB entry 7Y48 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 155GLY 724
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7Y48. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
155 165Right-handed alpha
Helix 2
AA2
B
167 201Right-handed alpha
Helix 3
AA3
B
207 256Right-handed alpha
Helix 4
AA4
B
259 266Right-handed alpha
Helix 5
AA5
B
267 277Right-handed alpha
Helix 6
AA6
B
277 288Right-handed alpha
Helix 7
AA7
B
289 311Right-handed alpha
Helix 8
AA8
B
311 320Right-handed alpha
Helix 9
AA9
B
321 360Right-handed alpha
Helix 10
AB1
B
361 367Right-handed alpha
Helix 11
AB2
B
370 419Right-handed alpha
Helix 12
AB3
B
421 425Right-handed 310
Helix 13
AB4
B
427 466Right-handed alpha
Helix 14
AB5
B
534 541Right-handed alpha
Helix 15
AB6
B
562 569Right-handed alpha
Helix 16
AB7
B
585 592Right-handed 310
Helix 17
AB8
B
594 598Right-handed 310
Helix 18
AB9
B
599 610Right-handed alpha
Helix 19
AC1
B
612 618Right-handed alpha
Helix 20
AC2
B
621 624Right-handed 310
Helix 21
AC3
B
635 651Right-handed alpha
Helix 22
AC4
B
665 680Right-handed alpha
Helix 23
AC5
B
714 720Right-handed alpha
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There are 3 sheets in PDB entry 7Y48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
510 517first strand
Strand 2
B
492 499anti-parallel
Strand 3
B
550 553anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
570 573first strand
Strand 2
B
654 658parallel
Strand 3
B
684 688parallel
Strand 4
B
522 526parallel
Strand 5
B
700 704parallel
Strand 6
B
709 713anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
582 583first strand
Strand 2
B
626 627anti-parallel
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