Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y4H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y4H entry

There is 1 chain in PDB entry 7Y4H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7Y4H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 38Right-handed alpha
Helix 2
AA2
A
50 64Right-handed alpha
Helix 3
AA3
A
78 99Right-handed alpha
Helix 4
AA4
A
110 115Right-handed alpha
Helix 5
AA5
A
123 130Right-handed alpha
Helix 6
AA6
A
140 163Right-handed alpha
Helix 7
AA7
A
172 176Right-handed 310
Helix 8
AA8
A
198 209Right-handed alpha
Helix 9
AA9
A
229 235Right-handed 310
Helix 10
AB1
A
254 273Right-handed alpha
Helix 11
AB2
A
294 303Right-handed 310
Helix 12
AB3
A
326 338Right-handed alpha
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There are 4 sheets in PDB entry 7Y4H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 9first strand
Strand 2
A
43 48parallel
Strand 3
A
67 72parallel
Strand 4
A
103 109parallel
Strand 5
A
166 171parallel
Strand 6
A
185 188parallel
Strand 7
A
213 218parallel
Strand 8
A
276 279parallel
Strand 9
A
3 9parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
17 18anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
244 247anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 309first strand
Strand 2
A
323 325anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il