Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y4P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y4P entry

There is 1 chain in PDB entry 7Y4P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 38GLN 708
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7Y4P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
155 159Right-handed 310
Helix 2
AA2
A
232 239Right-handed alpha
Helix 3
AA3
A
320 329Right-handed alpha
Helix 4
AA4
A
362 373Right-handed alpha
Helix 5
AA5
A
373 378Right-handed alpha
Helix 6
AA6
A
514 518Right-handed 310
Helix 7
AA7
A
520 525Right-handed alpha
Helix 8
AA8
A
526 528Right-handed 310
Helix 9
AA9
A
559 563Right-handed 310
Helix 10
AB1
A
591 594Right-handed 310
Helix 11
AB2
A
621 630Right-handed alpha
Helix 12
AB3
A
661 664Right-handed 310
Helix 13
AB4
A
666 672Right-handed alpha
Helix 14
AB5
A
689 693Right-handed 310
Helix 15
AB6
A
695 697Right-handed 310
Helix 16
AB7
A
702 706Right-handed 310
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There are 12 sheets in PDB entry 7Y4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
506 511anti-parallel
Strand 3
A
498 502anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
63 67anti-parallel
Strand 3
A
70 74anti-parallel
Strand 4
A
80 85anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
110 111anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
138 142anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 175first strand
Strand 2
A
183 188anti-parallel
Strand 3
A
201 206anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 252first strand
Strand 2
A
255 263anti-parallel
Strand 3
A
278 286anti-parallel
Strand 4
A
296 304anti-parallel
Strand 5
A
421 422parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 252first strand
Strand 2
A
255 263anti-parallel
Strand 3
A
278 286anti-parallel
Strand 4
A
296 304anti-parallel
Strand 5
A
307 318anti-parallel
Strand 6
A
336 343anti-parallel
Strand 7
A
355 361anti-parallel
Strand 8
A
424 429anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 442first strand
Strand 2
A
445 452anti-parallel
Strand 3
A
456 462anti-parallel
Strand 4
A
472 479anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 542first strand
Strand 2
A
533 535anti-parallel
Strand 3
A
556 557anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 569first strand
Strand 2
A
581 587anti-parallel
Strand 3
A
614 618anti-parallel
Strand 4
A
609 611anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 574first strand
Strand 2
A
650 659parallel
Strand 3
A
635 644anti-parallel
Strand 4
A
596 600anti-parallel
Strand 5
A
605 607anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
685 687first strand
Strand 2
A
678 680anti-parallel
Strand 3
A
699 700anti-parallel
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