Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y58


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y58 entry

There are 3 chains in PDB entry 7Y58 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 5LYS 514
B
 MET 1VAL 123
C
 VAL 3SER 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 7Y58. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 32Right-handed alpha
Helix 2
AA2
A
33 41Right-handed alpha
Helix 3
AA3
A
41 49Right-handed alpha
Helix 4
AA4
A
53 70Right-handed alpha
Helix 5
AA5
A
71 82Right-handed alpha
Helix 6
AA6
A
82 101Right-handed alpha
Helix 7
AA7
A
107 123Right-handed alpha
Helix 8
AA8
A
124 136Right-handed alpha
Helix 9
AA9
A
138 170Right-handed alpha
Helix 10
AB1
A
174 179Right-handed alpha
Helix 11
AB2
A
179 192Right-handed alpha
Helix 12
AB3
A
209 234Right-handed alpha
Helix 13
AB4
A
238 261Right-handed alpha
Helix 14
AB5
A
269 272Right-handed 310
Helix 15
AB6
A
273 304Right-handed alpha
Helix 16
AB7
A
308 315Right-handed alpha
Helix 17
AB8
A
316 338Right-handed alpha
Helix 18
AB9
A
338 360Right-handed alpha
Helix 19
AC1
A
365 391Right-handed alpha
Helix 20
AC2
A
395 434Right-handed alpha
Helix 21
AC3
A
435 439Right-handed 310
Helix 22
AC4
A
445 454Right-handed alpha
Helix 23
AC5
A
454 466Right-handed alpha
Helix 24
AC6
A
468 504Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 7Y58. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
35 40anti-parallel
Strand 3
B
96 99anti-parallel
Strand 4
B
112 114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
58 59anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 24first strand
Strand 2
C
80 85anti-parallel
Strand 3
C
70 72anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 62first strand
Strand 2
C
50 53anti-parallel
Strand 3
C
34 38anti-parallel
Strand 4
C
97 102anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il