Analysis of interatomic Contacts of Structural Units in PDB entry:
7Y5H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Y5H entry

There are 2 chains in PDB entry 7Y5H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 43TYR 370
A
 LYS 43TYR 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7Y5H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
47 50Right-handed 310
Helix 2
AA2
B
51 88Right-handed alpha
Helix 3
AA3
B
94 118Right-handed alpha
Helix 4
AA4
B
129 131Right-handed 310
Helix 5
AA5
B
132 158Right-handed alpha
Helix 6
AA6
B
171 191Right-handed alpha
Helix 7
AA7
B
218 229Right-handed alpha
Helix 8
AA8
B
229 246Right-handed alpha
Helix 9
AA9
B
251 268Right-handed alpha
Helix 10
AB1
B
268 280Right-handed alpha
Helix 11
AB2
B
288 298Right-handed alpha
Helix 12
AB3
B
331 345Right-handed alpha
Helix 13
AB4
B
360 362Right-handed 310
Helix 14
AB5
A
47 50Right-handed 310
Helix 15
AB6
A
51 88Right-handed alpha
Helix 16
AB7
A
96 118Right-handed alpha
Helix 17
AB8
A
129 131Right-handed 310
Helix 18
AB9
A
132 158Right-handed alpha
Helix 19
AC1
A
171 191Right-handed alpha
Helix 20
AC2
A
218 229Right-handed alpha
Helix 21
AC3
A
229 246Right-handed alpha
Helix 22
AC4
A
251 267Right-handed alpha
Helix 23
AC5
A
268 280Right-handed alpha
Helix 24
AC6
A
288 298Right-handed alpha
Helix 25
AC7
A
331 345Right-handed alpha
Helix 26
AC8
A
360 362Right-handed 310
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There are 2 sheets in PDB entry 7Y5H. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 314first strand
Strand 2
B
317 326anti-parallel
Strand 3
B
351 358parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 314first strand
Strand 2
A
317 326anti-parallel
Strand 3
A
351 358parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il